Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h18r
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.4  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   5.6  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   5.6  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   5.6  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   5.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.4  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   7.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 281 SKEECDWPQNVDCG 240
           +KEECD+ QN++ G
Sbjct: 38  NKEECDYYQNLNLG 51


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 102  TSHDLKKYICGN 67
            TSH+LK  +CGN
Sbjct: 1458 TSHELKGLLCGN 1469


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 102  TSHDLKKYICGN 67
            TSH+LK  +CGN
Sbjct: 1454 TSHELKGLLCGN 1465


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 240 FKNYSINTYIHTFFEKLSFY 181
           + NY+ N Y +  ++KL +Y
Sbjct: 94  YNNYNNNNYNNNNYKKLQYY 113


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 240 FKNYSINTYIHTFFEKLSFY 181
           + NY+ N Y +  ++KL +Y
Sbjct: 94  YNNYNNNNYNNNNYKKLQYY 113


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 240 FKNYSINTYIHTFFEKLSFY 181
           + NY+ N Y +  ++KL +Y
Sbjct: 94  YNNYNNNNYNNNNYKKLQYY 113


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 240 FKNYSINTYIHTFFEKLSFY 181
           + NY+ N Y +  ++KL +Y
Sbjct: 94  YNNYNNNNYNNNNYKKLQYY 113


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 307 QLRTTGLWFQHM*NLSQFSW 366
           Q+ TT +W +H     +F W
Sbjct: 65  QILTTNVWLEHEWQDHKFQW 84


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 425 DPSAAPTLCAQTGS 384
           DPS+ PT+ +Q+GS
Sbjct: 125 DPSSEPTVHSQSGS 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,457
Number of Sequences: 438
Number of extensions: 4667
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)