Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h18f
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61180.1 68414.m06894 disease resistance protein (CC-NBS-LRR ...    32   0.48 
At2g28540.1 68415.m03467 expressed protein                             29   2.6  
At3g59140.1 68416.m06593 ABC transporter family protein putative...    29   4.5  

>At1g61180.1 68414.m06894 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 889

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = +3

Query: 357 FQKTTMMLIVKVTMAVEETETKTITLEMDTPTP----AWLLKYVLKKIQTVFWSPM 512
           F    ++L+++ +  V E   K     + + TP     WL+ Y L K+++++WSP+
Sbjct: 757 FAPNLVVLLIEDSREVGEIINKEKATNLTSITPFLKLEWLILYNLPKLESIYWSPL 812


>At2g28540.1 68415.m03467 expressed protein 
          Length = 655

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 131 TNKATKGVNFES-GKATEICARIGSDGILVAHEHCTRFYKCAEGRPVALKCPPNLLFNPS 307
           TN    GV+ E   + T + + +G+   L A +  + FY+     P  L C  N    PS
Sbjct: 188 TNANEVGVSREEVNRGTSLMSPLGTGHYLEAEDDISLFYRQRLKDPEVLSCQSNGFLRPS 247

Query: 308 N 310
           N
Sbjct: 248 N 248


>At3g59140.1 68416.m06593 ABC transporter family protein putative
           multi resistance protein mrp - Arabidopsis thaliana,
           EMBL:ATMRPPROT
          Length = 1453

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 722 FQVSFSFRFLXCHCHFHYQHPRRLLE*FCL 633
           F ++ SF  L C C FH + P+R+ + FCL
Sbjct: 28  FGITLSFLTL-CICLFHKEPPKRIHQFFCL 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,547,115
Number of Sequences: 28952
Number of extensions: 271095
Number of successful extensions: 687
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)