Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h17r
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    23   2.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   6.0  

>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
           protein 7 protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 630 RTWQRLSRKTQPRDQ 674
           R W+RLS+K  P+ Q
Sbjct: 98  RDWERLSKKYDPQGQ 112


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 240 PPIWWLDPTDQ 208
           PP W L+PTD+
Sbjct: 698 PPRWILEPTDK 708


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 146 CSRAPCPGTCICRAAPGG 93
           C   PC    +CR + GG
Sbjct: 380 CDSNPCQNGGVCRISDGG 397


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,397
Number of Sequences: 336
Number of extensions: 4990
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)