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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h17r
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    47   3e-06
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    41   2e-04
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    37   0.003
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    30   0.30 
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    29   0.53 
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    29   0.53 
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    28   1.2  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    26   4.9  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    26   4.9  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   6.5  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    25   8.6  

>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 923

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 8/159 (5%)
 Frame = -2

Query: 564  DKDTLWDFNNGLATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMP 385
            D  T W+   G    + T+L   ++G      D+ G  G   +P  EL VRW +  +F P
Sbjct: 600  DTMTTWEHLRGS---IPTVLTNGISGMAFSGADVAGFFG---NPDAELFVRWYETAIFYP 653

Query: 384  TLQ-YSFV------PWDHDEEAVEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWW 226
              + ++ +      PW + E    + R+   +          A   S   G P+  P + 
Sbjct: 654  FFRAHAHIDTKRREPWLYGEPYTSLVRELLRIRYRLLPTWYTAFYNSHTHGFPILYPQFL 713

Query: 225  LDPTDQDALAVWDEFLLGER-VLAAPVLQQGAVSRDVYL 112
            + P D++  A+ D+F +G+  +L  PV         +YL
Sbjct: 714  MHPEDEEGFAIDDQFYVGDSGLLVKPVTHPSIDKITIYL 752


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 993

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
 Frame = -2

Query: 531  LATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQ----YSFV 364
            + + ++++L  NL G  +V  D+ G   YN +  +EL  RW+    F+P  +       +
Sbjct: 680  MVSSISSILTFNLLGIPMVGADVCG---YNGNTDEELCARWMALGAFLPFYRNHNSLGSI 736

Query: 363  PWDHDEEA--VEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWWLDPTDQDALAVW 190
            P +    A   E  R    +           M  +   GTP+  P+++  P      +V 
Sbjct: 737  PQEPFRWASVAEASRSAIEIRYSLLPYWYTLMHTASVDGTPMVRPLFFEFPKQISLASVD 796

Query: 189  DEFLLGERVLAAPVLQ 142
             +F++G  +L +P L+
Sbjct: 797  KQFMIGTALLISPALE 812


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 969

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 7/148 (4%)
 Frame = -2

Query: 564  DKDTLWDFNNGLATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMP 385
            D  +LW   + +   ++ ++  N+ G  +V  D+ G  G ++   +EL  RW+    F P
Sbjct: 647  DNHSLW---SNMFFSISGMIVFNMMGIPMVGADVCGFLGDSD---EELCSRWMAMGAFSP 700

Query: 384  -------TLQYSFVPWDHDEEAVEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWW 226
                     Q S  P+     A E  R+  ++           M  + Q GTP    ++ 
Sbjct: 701  FYRNHNNIYQISQEPYTWSSVA-EASRRAMYIRYSLLPYWYTIMAKASQDGTPALRALFV 759

Query: 225  LDPTDQDALAVWDEFLLGERVLAAPVLQ 142
              P D     V  +F++G+ +L  PVL+
Sbjct: 760  EFPNDPTLADVDRQFMVGDSLLVTPVLE 787


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 995

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 7/148 (4%)
 Frame = -2

Query: 564  DKDTLWDFNNGLATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMP 385
            D  +LW   + +   +   L  N+ G  +V  D+ G  G  +   +EL  RW+    F+P
Sbjct: 669  DNYSLW---SNMIFSIPGALTFNMVGLPMVGADVCGFMGNTD---EELCSRWMALGAFLP 722

Query: 384  TLQ-------YSFVPWDHDEEAVEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWW 226
              +        S  P+   E   E  R   ++           M  +  +G P+  P+++
Sbjct: 723  FYRNHNSLGSISQEPY-RWESVAESSRCAMNIRYSLLPYWYTLMYEASSQGLPLIRPLFF 781

Query: 225  LDPTDQDALAVWDEFLLGERVLAAPVLQ 142
              P +        +F++G  +L  PVL+
Sbjct: 782  EFPNEPSLANADRQFMVGSALLVTPVLE 809


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 15/70 (21%), Positives = 31/70 (44%)
 Frame = -2

Query: 510 LLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQYSFVPWDHDEEAVEI 331
           +++ ++  Y+L+L   +      E  + +L+    Q + ++P      +PWDH    +  
Sbjct: 87  VMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQ 146

Query: 330 CRKYTHLHAE 301
              YT  H E
Sbjct: 147 EDAYTGQHGE 156


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 630 RTWQRLSRKTQPRDQDGDQCRRSVLESVETN*IRQRR 740
           + W+  S +T PR+   D+   SV E VE    RQ+R
Sbjct: 23  KDWKDASVETTPRETSVDEDNTSVFEDVEAQDSRQKR 59


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 303 EYADEIVAAMEASIQKGTPVNPPIWWLDPTDQDALAVWDEFLL-GERVLAAPVLQQGAVS 127
           +Y D +  A  A+ Q G         L+  D ++L++W +F+L G   +  P+   G++S
Sbjct: 48  KYIDALFLASSATTQTG---------LNSVDLNSLSIWQQFILYGFTAITVPIWMHGSIS 98


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 393 FMPTLQYSFVPWDHDEEAVEICRKYTHLH 307
           F+P +  + +  D  E+A+++ + Y HLH
Sbjct: 856 FLPEIVRALLLLDKREQAIDLVKTYGHLH 884


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 229 PDGRVHGSSFLDGRLHSGHDLISIFGVKMRVFAADFY 339
           P+G+ H  S + G +++  ++ +IFG  M  F  DF+
Sbjct: 84  PNGKGHYPSGIRGLVNAASNIGNIFGQLMFGFMGDFF 120


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 162 LAAPVLQQGAVSRDVYLPRGSWRDGVTGELHQGPL 58
           +AAP    G VS    + RG+W   +    H+GP+
Sbjct: 239 IAAPNAMNGPVSCVSIIERGTWTSEINLIGHEGPV 273


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 146 STGAASTRSPNKNSSQTAKASWSVGSNHQMGGFT 247
           +TG+A+T S + +SS ++ +S S  S+    GFT
Sbjct: 372 ATGSATTTSYSSDSSASSSSSSSHESSAASNGFT 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,385,477
Number of Sequences: 5004
Number of extensions: 77448
Number of successful extensions: 217
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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