Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h17r
(742 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 47 3e-06
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 41 2e-04
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 37 0.003
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 30 0.30
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 29 0.53
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 29 0.53
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 28 1.2
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 26 4.9
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 26 4.9
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 6.5
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 25 8.6
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 46.8 bits (106), Expect = 3e-06
Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 8/159 (5%)
Frame = -2
Query: 564 DKDTLWDFNNGLATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMP 385
D T W+ G + T+L ++G D+ G G +P EL VRW + +F P
Sbjct: 600 DTMTTWEHLRGS---IPTVLTNGISGMAFSGADVAGFFG---NPDAELFVRWYETAIFYP 653
Query: 384 TLQ-YSFV------PWDHDEEAVEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWW 226
+ ++ + PW + E + R+ + A S G P+ P +
Sbjct: 654 FFRAHAHIDTKRREPWLYGEPYTSLVRELLRIRYRLLPTWYTAFYNSHTHGFPILYPQFL 713
Query: 225 LDPTDQDALAVWDEFLLGER-VLAAPVLQQGAVSRDVYL 112
+ P D++ A+ D+F +G+ +L PV +YL
Sbjct: 714 MHPEDEEGFAIDDQFYVGDSGLLVKPVTHPSIDKITIYL 752
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 41.1 bits (92), Expect = 2e-04
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Frame = -2
Query: 531 LATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQ----YSFV 364
+ + ++++L NL G +V D+ G YN + +EL RW+ F+P + +
Sbjct: 680 MVSSISSILTFNLLGIPMVGADVCG---YNGNTDEELCARWMALGAFLPFYRNHNSLGSI 736
Query: 363 PWDHDEEA--VEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWWLDPTDQDALAVW 190
P + A E R + M + GTP+ P+++ P +V
Sbjct: 737 PQEPFRWASVAEASRSAIEIRYSLLPYWYTLMHTASVDGTPMVRPLFFEFPKQISLASVD 796
Query: 189 DEFLLGERVLAAPVLQ 142
+F++G +L +P L+
Sbjct: 797 KQFMIGTALLISPALE 812
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 36.7 bits (81), Expect = 0.003
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 7/148 (4%)
Frame = -2
Query: 564 DKDTLWDFNNGLATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMP 385
D +LW + + ++ ++ N+ G +V D+ G G ++ +EL RW+ F P
Sbjct: 647 DNHSLW---SNMFFSISGMIVFNMMGIPMVGADVCGFLGDSD---EELCSRWMAMGAFSP 700
Query: 384 -------TLQYSFVPWDHDEEAVEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWW 226
Q S P+ A E R+ ++ M + Q GTP ++
Sbjct: 701 FYRNHNNIYQISQEPYTWSSVA-EASRRAMYIRYSLLPYWYTIMAKASQDGTPALRALFV 759
Query: 225 LDPTDQDALAVWDEFLLGERVLAAPVLQ 142
P D V +F++G+ +L PVL+
Sbjct: 760 EFPNDPTLADVDRQFMVGDSLLVTPVLE 787
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 30.3 bits (65), Expect = 0.30
Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 7/148 (4%)
Frame = -2
Query: 564 DKDTLWDFNNGLATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMP 385
D +LW + + + L N+ G +V D+ G G + +EL RW+ F+P
Sbjct: 669 DNYSLW---SNMIFSIPGALTFNMVGLPMVGADVCGFMGNTD---EELCSRWMALGAFLP 722
Query: 384 TLQ-------YSFVPWDHDEEAVEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWW 226
+ S P+ E E R ++ M + +G P+ P+++
Sbjct: 723 FYRNHNSLGSISQEPY-RWESVAESSRCAMNIRYSLLPYWYTLMYEASSQGLPLIRPLFF 781
Query: 225 LDPTDQDALAVWDEFLLGERVLAAPVLQ 142
P + +F++G +L PVL+
Sbjct: 782 EFPNEPSLANADRQFMVGSALLVTPVLE 809
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 29.5 bits (63), Expect = 0.53
Identities = 15/70 (21%), Positives = 31/70 (44%)
Frame = -2
Query: 510 LLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQYSFVPWDHDEEAVEI 331
+++ ++ Y+L+L + E + +L+ Q + ++P +PWDH +
Sbjct: 87 VMEPSMADYSLLLTQPVFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQ 146
Query: 330 CRKYTHLHAE 301
YT H E
Sbjct: 147 EDAYTGQHGE 156
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 29.5 bits (63), Expect = 0.53
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 630 RTWQRLSRKTQPRDQDGDQCRRSVLESVETN*IRQRR 740
+ W+ S +T PR+ D+ SV E VE RQ+R
Sbjct: 23 KDWKDASVETTPRETSVDEDNTSVFEDVEAQDSRQKR 59
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -2
Query: 303 EYADEIVAAMEASIQKGTPVNPPIWWLDPTDQDALAVWDEFLL-GERVLAAPVLQQGAVS 127
+Y D + A A+ Q G L+ D ++L++W +F+L G + P+ G++S
Sbjct: 48 KYIDALFLASSATTQTG---------LNSVDLNSLSIWQQFILYGFTAITVPIWMHGSIS 98
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -2
Query: 393 FMPTLQYSFVPWDHDEEAVEICRKYTHLH 307
F+P + + + D E+A+++ + Y HLH
Sbjct: 856 FLPEIVRALLLLDKREQAIDLVKTYGHLH 884
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 229 PDGRVHGSSFLDGRLHSGHDLISIFGVKMRVFAADFY 339
P+G+ H S + G +++ ++ +IFG M F DF+
Sbjct: 84 PNGKGHYPSGIRGLVNAASNIGNIFGQLMFGFMGDFF 120
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 162 LAAPVLQQGAVSRDVYLPRGSWRDGVTGELHQGPL 58
+AAP G VS + RG+W + H+GP+
Sbjct: 239 IAAPNAMNGPVSCVSIIERGTWTSEINLIGHEGPV 273
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 146 STGAASTRSPNKNSSQTAKASWSVGSNHQMGGFT 247
+TG+A+T S + +SS ++ +S S S+ GFT
Sbjct: 372 ATGSATTTSYSSDSSASSSSSSSHESSAASNGFT 405
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,385,477
Number of Sequences: 5004
Number of extensions: 77448
Number of successful extensions: 217
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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