Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h17r
(742 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026208-3|AAB71267.3| 903|Caenorhabditis elegans Hypothetical ... 53 2e-07
Z77663-7|CAB01206.1| 856|Caenorhabditis elegans Hypothetical pr... 52 3e-07
U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical p... 52 3e-07
U40800-5|AAO91743.1| 936|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z66522-2|CAA91407.1| 408|Caenorhabditis elegans Hypothetical pr... 31 0.65
U00036-3|AAT92065.1| 529|Caenorhabditis elegans Dumpy : shorter... 31 0.86
U00036-2|AAK29859.1| 592|Caenorhabditis elegans Dumpy : shorter... 31 0.86
AL033514-6|CAA22096.2| 373|Caenorhabditis elegans Hypothetical ... 29 2.6
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z68014-2|CAA92024.1| 565|Caenorhabditis elegans Hypothetical pr... 28 6.0
>AF026208-3|AAB71267.3| 903|Caenorhabditis elegans Hypothetical
protein F52D1.1 protein.
Length = 903
Score = 52.8 bits (121), Expect = 2e-07
Identities = 48/178 (26%), Positives = 74/178 (41%), Gaps = 12/178 (6%)
Frame = -2
Query: 519 VTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQ-YSF------VP 361
+ LL ++ G V D+ G+ +P +ELLVRW QA F P + +S P
Sbjct: 582 IPMLLSLSTAGLPFVGADV---GGFFGNPDEELLVRWYQAGAFQPFFRGHSHQDTKRREP 638
Query: 360 WDHDEEAVEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWWLDPTDQDALAVWDE- 184
W + E R + + G PV P W D+ + WDE
Sbjct: 639 WLFADNTTEAIRNAIKTRYAFLPYWYTLFYEHAKTGKPVMRPFWMEFIEDEPS---WDED 695
Query: 183 --FLLGERVLAAPVLQQGAVSRDVYLP--RGSWRDGVTGELHQGPLWLRDYPAPLDTL 22
+++G +L PVL++ +YLP R W D T + P ++ PA L+T+
Sbjct: 696 RQWMVGNGLLVKPVLEEKVKELSIYLPGKRQVWYDWETHKARPSPGAVQ-IPAELNTI 752
>Z77663-7|CAB01206.1| 856|Caenorhabditis elegans Hypothetical
protein F53F4.8 protein.
Length = 856
Score = 52.4 bits (120), Expect = 3e-07
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Frame = -2
Query: 531 LATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQYSFVPWDH 352
L T V + NL G V D+ G G + ++EL +RW Q F + +
Sbjct: 528 LRTSVIGAQEFNLFGIPYVGSDVCGFLG---TSNEELCLRWQQMGAFHSFFRNHNTLGEP 584
Query: 351 DEE-----AVEICRKYTHLHA-EYADEIVAAMEASIQKGTPVNPPIWWLDPTDQDALAVW 190
++ +V K +L +Y + + + + G V P+++ PTD L +
Sbjct: 585 AQDPAVWPSVAAATKIANLFRYQYLPHLFSLHFQASKDGLTVVRPVFFEFPTDSATLDLG 644
Query: 189 DEFLLGERVLAAPVLQQGAVSRDVYLPRGSW 97
+F+ G +L APV+ QGAVS +YLP W
Sbjct: 645 YQFMWGSGILVAPVVYQGAVSTSLYLPNDVW 675
>U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical
protein R05F9.12 protein.
Length = 955
Score = 52.4 bits (120), Expect = 3e-07
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 6/151 (3%)
Frame = -2
Query: 531 LATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQ-YSFVPWD 355
L T V + NL G V D+ G G + ++EL +RW Q F + ++ +
Sbjct: 595 LRTSVIGAQEFNLFGIPYVGSDVCGFIG---TTTEELCLRWQQMGAFHSFFRNHNTIGAP 651
Query: 354 HDEEAV-----EICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWWLDPTDQDALAVW 190
+ AV +K +Y + + + G V P+++ PTD + +
Sbjct: 652 AQDPAVWPSVAAATKKANLFRYQYLPYLFSLHFTASLSGATVIRPVFFEYPTDAETFNLG 711
Query: 189 DEFLLGERVLAAPVLQQGAVSRDVYLPRGSW 97
EF+ G R+L APV+ QG S + YLP W
Sbjct: 712 YEFMWGSRILVAPVIYQGTTSVNAYLPTDRW 742
>U40800-5|AAO91743.1| 936|Caenorhabditis elegans Hypothetical protein
D2096.3 protein.
Length = 936
Score = 49.6 bits (113), Expect = 2e-06
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Frame = -2
Query: 531 LATLVTTLLQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQYSFVPWDH 352
L T V +++ N+ G V D+ G NG + ++EL +RW Q F P +
Sbjct: 600 LQTSVIGVMEFNMFGVPYVGSDICGFNGVS---NEELCLRWHQFGAFSPFSRDHNSEGMP 656
Query: 351 DEE-----AVEICRKYTHLHAEYADEIVAAMEASIQK-GTPVNPPIWWLDPTDQDALAVW 190
D++ +V K Y + ++ + + G V P+++ P D++ L +
Sbjct: 657 DQDPAVWPSVANAAKIALTFRYYFLPFLYSLHYNAARYGHTVIRPLFFEFPKDEETLNIS 716
Query: 189 DEFLLGERVLAAPVLQQGAVSRDVYLPRGSW 97
++FL G ++ AP L QG S Y P +W
Sbjct: 717 EQFLWGSALMIAPALYQGQTSVHAYFPSDTW 747
>Z70753-5|CAB54240.1| 910|Caenorhabditis elegans Hypothetical protein
F40F9.6b protein.
Length = 910
Score = 47.2 bits (107), Expect = 1e-05
Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 12/168 (7%)
Frame = -2
Query: 507 LQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQ-YSFV------PWDHD 349
L +++ G V D+ G+ +P ++LL RW Q F P + ++ + PW
Sbjct: 594 LSLSIAGVPFVGADV---GGFFGNPDEQLLSRWYQTAAFQPFFRAHAHIDTRRREPWLFS 650
Query: 348 EEAVEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWWLDPTDQDALAVWDEFLLGE 169
E+ +I R+ + + G P P+++ D L ++++G
Sbjct: 651 EQTQQIIREALRTRYALLPYWYTLFQQHTENGVPPMRPLFYEFENDDLLLEEQKQWMVGS 710
Query: 168 RVLAAPVLQQGAVSRDVYLPRGS-----WRDGVTGELHQGPLWLRDYP 40
+LA PV+++ + V LPRG W + V+G +G D P
Sbjct: 711 GILARPVVEKDTFNVQVKLPRGEHKTERWFEWVSGNEVRGESIYVDAP 758
>Z70753-4|CAA94764.1| 924|Caenorhabditis elegans Hypothetical protein
F40F9.6a protein.
Length = 924
Score = 47.2 bits (107), Expect = 1e-05
Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 12/168 (7%)
Frame = -2
Query: 507 LQMNLNGYTLVLPDMIGGNGYNESPSKELLVRWLQANVFMPTLQ-YSFV------PWDHD 349
L +++ G V D+ G+ +P ++LL RW Q F P + ++ + PW
Sbjct: 608 LSLSIAGVPFVGADV---GGFFGNPDEQLLSRWYQTAAFQPFFRAHAHIDTRRREPWLFS 664
Query: 348 EEAVEICRKYTHLHAEYADEIVAAMEASIQKGTPVNPPIWWLDPTDQDALAVWDEFLLGE 169
E+ +I R+ + + G P P+++ D L ++++G
Sbjct: 665 EQTQQIIREALRTRYALLPYWYTLFQQHTENGVPPMRPLFYEFENDDLLLEEQKQWMVGS 724
Query: 168 RVLAAPVLQQGAVSRDVYLPRGS-----WRDGVTGELHQGPLWLRDYP 40
+LA PV+++ + V LPRG W + V+G +G D P
Sbjct: 725 GILARPVVEKDTFNVQVKLPRGEHKTERWFEWVSGNEVRGESIYVDAP 772
>Z66522-2|CAA91407.1| 408|Caenorhabditis elegans Hypothetical
protein F14E5.4 protein.
Length = 408
Score = 31.5 bits (68), Expect = 0.65
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 387 PTLQYSFVPWDHDEEAVEICRKYTH-LHAEYADEIVAAMEASIQKGTPVNPPI 232
P SF PW EE + C KYTH + +Y + A + G P+ P I
Sbjct: 155 PDFGGSFHPWTIYEEFIANCLKYTHPVFKQYPFHTIEAHINEYKNGIPLPPLI 207
>U00036-3|AAT92065.1| 529|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 31, isoform b protein.
Length = 529
Score = 31.1 bits (67), Expect = 0.86
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 519 PTSRDRC*SPKGCLCQPCGRRLGGLGFSCPL*SRSLGRTWQRLSRKTQPRD-QDGDQC 689
P DRC P G Q C + + G G +C SL R+ R+S PR+ ++G +C
Sbjct: 343 PRRCDRCRCPDGFTGQYCEQVMPGYGATCG-GKISLTRSTTRISSPGYPREFKEGQEC 399
>U00036-2|AAK29859.1| 592|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 31, isoform a protein.
Length = 592
Score = 31.1 bits (67), Expect = 0.86
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 519 PTSRDRC*SPKGCLCQPCGRRLGGLGFSCPL*SRSLGRTWQRLSRKTQPRD-QDGDQC 689
P DRC P G Q C + + G G +C SL R+ R+S PR+ ++G +C
Sbjct: 343 PRRCDRCRCPDGFTGQYCEQVMPGYGATCG-GKISLTRSTTRISSPGYPREFKEGQEC 399
>AL033514-6|CAA22096.2| 373|Caenorhabditis elegans Hypothetical
protein Y75B8A.6 protein.
Length = 373
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 402 PVATSPATPYSETHYNHFLRSYQAAPTCTR*GSFAIES*PTSRDRC*SPKGCLCQPCGR 578
P+ + ATP + N +S + P TR + TSR RC +GC C+PCG+
Sbjct: 46 PLQAASATPPVPSSMNRS-QSRASCPQSTR--EMSSHRSTTSR-RCGVCRGCQCKPCGQ 100
>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
protein M110.4b protein.
Length = 1155
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = +3
Query: 150 PGQPARALLTRTRPKQPKRPGR----*DPTTR 233
P QPA+ +T T P++PKR + DPTT+
Sbjct: 119 PAQPAQQQMTHTAPQEPKRQRKALEIVDPTTK 150
>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
protein M110.4a protein.
Length = 1156
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = +3
Query: 150 PGQPARALLTRTRPKQPKRPGR----*DPTTR 233
P QPA+ +T T P++PKR + DPTT+
Sbjct: 119 PAQPAQQQMTHTAPQEPKRQRKALEIVDPTTK 150
>Z68014-2|CAA92024.1| 565|Caenorhabditis elegans Hypothetical
protein W04G3.2 protein.
Length = 565
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 717 SPQIPVQNGDIDLHPGHVVESYVRAVAKFGPMIEIRAG 604
+PQ PVQNG+ P HVV S + + F E+ AG
Sbjct: 97 APQGPVQNGN---QPTHVVSSLEKTLESFFTAPELPAG 131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,309,206
Number of Sequences: 27780
Number of extensions: 480221
Number of successful extensions: 1531
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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