Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h17f
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo... 27 2.1
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 27 2.8
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 26 5.0
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 5.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 6.5
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 25 6.5
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 25 6.5
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 6.5
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 6.5
>SPAC8E11.01c
||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 326 FNGTVVLNKSNSTGRFKTATCKNTQSYPKRKTIPLY 433
F+G+ V++K+NS+G F++ P+ + + +Y
Sbjct: 75 FSGSAVIDKTNSSGFFESGFFSRKSVDPEERIVLIY 110
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 262 ISIHWDGPADRVFEDCFNFGSLQWYGGPEQKQQYWPIQN 378
I +HWD + ++ED F ++ GP +Y I N
Sbjct: 37 IVVHWDKMSPDLWEDILQFDAIVVGPGPGHPAEYSSILN 75
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 25.8 bits (54), Expect = 5.0
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Frame = +1
Query: 202 DEEVIFDINTAYDEESGGYRISIHWDGPADRVFEDCFNFG-SLQWYGGPEQKQQYWPIQN 378
+E+ ++ +N E S I+WDGP R+ + F + Y E
Sbjct: 153 NEDYLYSVNVVSRELS-----PIYWDGPVYRILRGTWFFSRGDKLYPCEENLATQVEEGY 207
Query: 379 SNLQKYSIISKEEDNSAVSERYW 447
N Y S E+D++A + W
Sbjct: 208 LNSCPYREFSNEKDSAAAQSKTW 230
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 197 LMMRR*SSISTQPTMKSPVATALAYIGMDLRTEFLKTASTLV 322
LMM + ST PTM + +A A + ++ +FLK + LV
Sbjct: 472 LMMEHSNDFSTMPTMIASIAVAFQTLFENV-CDFLKVRAALV 512
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 6.5
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = +1
Query: 184 RRVASDDEEVIFDINTAYDEESGGYRISIHWDGPADRVFEDCFNFGSLQWYGGPEQKQQY 363
R + SD V D + +E S + D + + ED N + + + P ++
Sbjct: 3954 RELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLL 4013
Query: 364 WPIQNSNLQKYS-----IISKEEDNSAVSER 441
Q SN Q + ++SKE+DN A+ ++
Sbjct: 4014 ETEQKSNEQSAANNESDLVSKEDDNKALEDK 4044
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 65 SALYQKHPYNATYWW--KNMKTEDFF 136
S+++QK+ Y YW ++ TED F
Sbjct: 526 SSIFQKYNYGGKYWCPSPSLSTEDLF 551
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 349 QKQQY-WPIQNSNLQKYSIISKEEDNSAVSERYWLNSAGQYFYVQ 480
+K Y W ++++ +QK S + +E+ ER+ ++ G+Y ++
Sbjct: 282 RKYMYIWDLESAQVQKVSRMYGQENFQPSMERFHVDPTGKYIALE 326
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 313 NFGSLQWYGGPEQKQQYWPIQNSNLQKYSIISKEEDNSAVSERYWLNSAGQYFYVQPEAP 492
+FG+ Y K W QN+ +IS +D S+V + + S+G + Y AP
Sbjct: 181 SFGTSLSYYNRSSKPSDWNQQNNGGHLSGVISITQDVSSVPLQSSVFSSGNHAYHASMAP 240
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +2
Query: 347 NKSNSTGRFKTATCKNTQSYPKRKTIPLYRNATG*TRPANTSTCNPK 487
N S + F T T K +P PL++ A ++ C+PK
Sbjct: 6 NSSTISPTFSTPTKKRNLVFPNSPITPLHQQALLGRNGRSSKRCSPK 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,464
Number of Sequences: 5004
Number of extensions: 52016
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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