Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h17f
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980...    30   1.6  
02_02_0476 - 10751647-10753323                                         28   5.0  
08_01_1058 + 10765837-10766325                                         27   8.8  

>01_06_0147 +
           26997641-26997688,26997783-26997857,26997966-26998052,
           26998566-26998622,26998867-26998959,26999528-26999600,
           26999830-26999905,27000217-27000280,27000951-27000980,
           27001251-27001367,27002742-27002782,27002870-27003176,
           27003279-27003368,27003479-27003541,27003678-27003752,
           27003922-27003984,27004714-27004784,27004885-27005068
          Length = 537

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +1

Query: 187 RVASDDEEVI-FDINT--AYDEESGGYRISIHWDGPADRVFEDCFNFGSLQWYGGPE 348
           ++ +++++V+ + +N   A D  +G Y +  H+  P     ED  +FG++ +   PE
Sbjct: 276 KIDTNEQKVVHYQVNCRPARDRNTGSYSVKHHYPSPIVSWIEDLSSFGNVSFSQDPE 332


>02_02_0476 - 10751647-10753323
          Length = 558

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 346 EQKQQYWPIQNSNLQKYSIISKEEDNSAVSERYWLNSAGQYFYVQPEAPLF 498
           +Q+Q+Y   +  N Q Y + + E+ +        +N    Y Y Q +  LF
Sbjct: 247 DQEQEYCAPEQQNFQDYHVAAAEQTDQDYFYTEMINQEQDYAYQQQQQHLF 297


>08_01_1058 + 10765837-10766325
          Length = 162

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -2

Query: 320 PKLKQSSKTRSAGPSQCMLMR*PPDSSS*AVLISKITSSSSEATRR 183
           P  K++    +A  +QC   R PP S+   V+++ + SSSS+  RR
Sbjct: 32  PPAKRAPSLPAAPSAQCRRRR-PPGSAVIIVVLTALPSSSSQHHRR 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,283,744
Number of Sequences: 37544
Number of extensions: 366944
Number of successful extensions: 917
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)