Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h17f
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   9e-08
SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.0  

>SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
 Frame = +1

Query: 298 FEDCFNFGSLQWYGGPEQKQQYWPIQNS--NLQKY-------SIISKEEDNSAVSERYWL 450
           F+D F    + W+GG E   Q WP++ +  N+Q Y       + +S       V ERYWL
Sbjct: 167 FQDDFRLDKMHWFGGSELYMQAWPLEKAEINMQPYIPSDTILNFLSNRTAYGGVLERYWL 226

Query: 451 NSAGQYFYVQPEAPLFIDYHNVEDN 525
           NS G    V  E PL I  ++  +N
Sbjct: 227 NSNGIAIVVDEEVPLLIAINDSNNN 251


>SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 413

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 295 VFEDCFNFGSLQWYGGPEQKQQYW-PIQNSNLQ 390
           VF D  N   L  YG PEQK+++  P+ N  ++
Sbjct: 124 VFSDSGNMEVLHLYGSPEQKKKWLDPLLNGEMR 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,517,669
Number of Sequences: 59808
Number of extensions: 405607
Number of successful extensions: 828
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)