Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h17f
         (609 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023924-1|ABB36428.1|  657|Drosophila melanogaster RE74917p pro...    92   6e-19
AE014297-3790|AAF56462.1|  657|Drosophila melanogaster CG11909-P...    92   6e-19
BT003459-1|AAO39462.1|  925|Drosophila melanogaster RH30917p pro...    32   0.53 
AE014298-780|AAF46066.2|  725|Drosophila melanogaster CG33080-PB...    32   0.53 
AE014298-779|AAF46068.2|  925|Drosophila melanogaster CG33080-PA...    32   0.53 

>BT023924-1|ABB36428.1|  657|Drosophila melanogaster RE74917p
           protein.
          Length = 657

 Score = 91.9 bits (218), Expect = 6e-19
 Identities = 40/95 (42%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
 Frame = +1

Query: 319 GSLQWYGGPEQKQQYWPIQNSNLQKYSIISKEEDNSAVSERYWLNSAGQYFYVQPEAPLF 498
           GS  W+ GPEQKQ YWP++      YS + KE DN  V ERYWLN  G + YV+   PLF
Sbjct: 130 GSTHWFSGPEQKQHYWPVERQRHSNYSYLPKELDNFGVGERYWLNGDGVFLYVESNTPLF 189

Query: 499 IDYHNVE-DNHICFIAEVAAPYSSKRTHNSLKYDI 600
           ID ++    + +C  A  A PY  + T     Y +
Sbjct: 190 IDQNSAAYPDQLCLSAISALPYDPRVTSAKFVYHV 224


>AE014297-3790|AAF56462.1|  657|Drosophila melanogaster CG11909-PA
           protein.
          Length = 657

 Score = 91.9 bits (218), Expect = 6e-19
 Identities = 40/95 (42%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
 Frame = +1

Query: 319 GSLQWYGGPEQKQQYWPIQNSNLQKYSIISKEEDNSAVSERYWLNSAGQYFYVQPEAPLF 498
           GS  W+ GPEQKQ YWP++      YS + KE DN  V ERYWLN  G + YV+   PLF
Sbjct: 130 GSTHWFSGPEQKQHYWPVERQRHSNYSYLPKELDNFGVGERYWLNGDGVFLYVESNTPLF 189

Query: 499 IDYHNVE-DNHICFIAEVAAPYSSKRTHNSLKYDI 600
           ID ++    + +C  A  A PY  + T     Y +
Sbjct: 190 IDQNSAAYPDQLCLSAISALPYDPRVTSAKFVYHV 224


>BT003459-1|AAO39462.1|  925|Drosophila melanogaster RH30917p
           protein.
          Length = 925

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
 Frame = +1

Query: 241 EESGGYRI-SIHWDGPADRVFE-DCFNF--GSLQWYGGPEQKQQYWPIQNSNLQ--KY-S 399
           E+ G +R  ++ W      +   DC+     +  W+GG   K Q W +  +N     Y S
Sbjct: 349 EDKGVFRCYTLQWQALTPGLLPTDCYELKRDNGLWFGGGVTKGQEWSLSYANFDFAPYAS 408

Query: 400 IISKEEDNSAVSERYWLNSAGQYFYVQPEAPLFIDYHNVEDNHICFIA 543
             SK        +RY++NS G    V  + PL +  +  E N  C  A
Sbjct: 409 GDSKIHQFGNGVKRYFINSIGVAMQVSEKTPLQLGVNRTE-NRFCLRA 455


>AE014298-780|AAF46066.2|  725|Drosophila melanogaster CG33080-PB,
           isoform B protein.
          Length = 725

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
 Frame = +1

Query: 241 EESGGYRI-SIHWDGPADRVFE-DCFNF--GSLQWYGGPEQKQQYWPIQNSNLQ--KY-S 399
           E+ G +R  ++ W      +   DC+     +  W+GG   K Q W +  +N     Y S
Sbjct: 149 EDKGVFRCYTLQWQALTPGLLPTDCYELKRDNGLWFGGGVTKGQEWSLSYANFDFAPYAS 208

Query: 400 IISKEEDNSAVSERYWLNSAGQYFYVQPEAPLFIDYHNVEDNHICFIA 543
             SK        +RY++NS G    V  + PL +  +  E N  C  A
Sbjct: 209 GDSKIHQFGNGVKRYFINSIGVAMQVSEKTPLQLGVNRTE-NRFCLRA 255


>AE014298-779|AAF46068.2|  925|Drosophila melanogaster CG33080-PA,
           isoform A protein.
          Length = 925

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
 Frame = +1

Query: 241 EESGGYRI-SIHWDGPADRVFE-DCFNF--GSLQWYGGPEQKQQYWPIQNSNLQ--KY-S 399
           E+ G +R  ++ W      +   DC+     +  W+GG   K Q W +  +N     Y S
Sbjct: 349 EDKGVFRCYTLQWQALTPGLLPTDCYELKRDNGLWFGGGVTKGQEWSLSYANFDFAPYAS 408

Query: 400 IISKEEDNSAVSERYWLNSAGQYFYVQPEAPLFIDYHNVEDNHICFIA 543
             SK        +RY++NS G    V  + PL +  +  E N  C  A
Sbjct: 409 GDSKIHQFGNGVKRYFINSIGVAMQVSEKTPLQLGVNRTE-NRFCLRA 455


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,769,461
Number of Sequences: 53049
Number of extensions: 619832
Number of successful extensions: 1934
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1931
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)