BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11h17f (609 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81481-1|CAB03947.1| 404|Caenorhabditis elegans Hypothetical pr... 30 1.1 Z80221-1|CAB02309.1| 690|Caenorhabditis elegans Hypothetical pr... 28 4.5 AF077534-6|AAC26288.1| 199|Caenorhabditis elegans Hypothetical ... 28 4.5 U64834-3|AAB04824.1| 437|Caenorhabditis elegans Hypothetical pr... 27 7.9 >Z81481-1|CAB03947.1| 404|Caenorhabditis elegans Hypothetical protein C38D9.1 protein. Length = 404 Score = 30.3 bits (65), Expect = 1.1 Identities = 17/74 (22%), Positives = 33/74 (44%) Frame = +1 Query: 370 IQNSNLQKYSIISKEEDNSAVSERYWLNSAGQYFYVQPEAPLFIDYHNVEDNHICFIAEV 549 ++NSN + SI + +SE+ W +YF +P+ P + N IC E+ Sbjct: 71 VRNSNDLRCSINPPSDVPHKISEKEWCRKFVEYFNGEPQEPSLQNMPEKVWNEICAKMEL 130 Query: 550 AAPYSSKRTHNSLK 591 + +++ L+ Sbjct: 131 CDRFVARKVSRILR 144 >Z80221-1|CAB02309.1| 690|Caenorhabditis elegans Hypothetical protein ZC247.2 protein. Length = 690 Score = 28.3 bits (60), Expect = 4.5 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%) Frame = -2 Query: 251 PDSSS*AVLISKITSSSSEATRRPMW--PVSKV 159 PDS+ + ++S T+S S+AT +W PV+KV Sbjct: 151 PDSTEQSSMVSSPTASVSDATNYSLWIVPVTKV 183 >AF077534-6|AAC26288.1| 199|Caenorhabditis elegans Hypothetical protein K07D4.4 protein. Length = 199 Score = 28.3 bits (60), Expect = 4.5 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +1 Query: 190 VASDDEEVIFDINTAYDEESGGYR 261 V S DE I D T+ DE+ GGYR Sbjct: 51 VKSQDEVFIMDHPTSPDEQQGGYR 74 >U64834-3|AAB04824.1| 437|Caenorhabditis elegans Hypothetical protein F54D11.1 protein. Length = 437 Score = 27.5 bits (58), Expect = 7.9 Identities = 16/56 (28%), Positives = 24/56 (42%) Frame = +2 Query: 281 DLRTEFLKTASTLVPFNGTVVLNKSNSTGRFKTATCKNTQSYPKRKTIPLYRNATG 448 DL T+FLK A+ GTV++ + K + T + +T N TG Sbjct: 82 DLLTDFLKNATNATAIGGTVIIREDLKDCSDKRQVARLTDYFDVFRTTDSDGNNTG 137 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,408,665 Number of Sequences: 27780 Number of extensions: 304436 Number of successful extensions: 829 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 771 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 829 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1311096392 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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