Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h17f
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65410.1 68418.m08226 zinc finger homeobox family protein / Z...    29   1.8  
At5g15580.1 68418.m01824 expressed protein unknown protein F14P3...    29   1.8  
At2g17090.1 68415.m01973 protein kinase family protein similar t...    28   4.2  
At3g57200.1 68416.m06368 hypothetical protein                          28   5.6  

>At5g65410.1 68418.m08226 zinc finger homeobox family protein /
           ZF-HD homeobox family protein similar to hypothetical
           proteins (GP|4220524)(GP|3184285|)(Arabidopsis); ZP-HD
           homeobox family protein GP|13374061 (Flaveria
           bidentis);GP:5091602 {Oryza sativa}
          Length = 279

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -3

Query: 262 CGSHRTLHRR-LC*YRRLPPHHQKP 191
           CG HR  HR+ L  +   PP HQ P
Sbjct: 114 CGCHRNFHRKELPYFHHAPPQHQPP 138


>At5g15580.1 68418.m01824 expressed protein unknown protein F14P3.18
           - Arabidopsis thaliana, EMBL:AC009755
          Length = 927

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 379 SNLQKYSIISKEEDNSAVSERYWLN 453
           S ++K SI+ KE+DN +  E +W+N
Sbjct: 657 SPVRKISIVFKEDDNLSSEESHWMN 681


>At2g17090.1 68415.m01973 protein kinase family protein similar to
           Arabidopsis thaliana APK1A [SP|Q06548], APK1B
           [SP|P46573]; contains Pfam profile: PF00069 Protein
           kinase domain
          Length = 465

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 385 GCCFESASTVAFVQDHRT 332
           GCC+  +STV  VQDH T
Sbjct: 2   GCCYSLSSTVDPVQDHTT 19


>At3g57200.1 68416.m06368 hypothetical protein
          Length = 504

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
 Frame = +1

Query: 307 CFNFGSLQWYGGPEQKQQYWPIQNSNLQKYSIISKEEDNS---AVSERYWLNSAGQYFYV 477
           CF F  LQW GG +    +W I +       +++ +E  S   +VS+   ++  GQ    
Sbjct: 40  CFAF-VLQWRGGLDDPVTHWSIDHHEFP--GMVTTQEKRSLRRSVSDSGCVDLLGQ--SR 94

Query: 478 QPEAPLF----IDYHNVEDNHICFIAEVAA 555
            P  P F     DYH+     IC     +A
Sbjct: 95  SPSFPYFRNWKFDYHSDLKPRICITTSTSA 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,617,635
Number of Sequences: 28952
Number of extensions: 283488
Number of successful extensions: 677
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)