BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11h14r (683 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 242 3e-65 SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 54 2e-08 SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 54 2e-08 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 4.4 SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 5.8 SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.8 SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 7.7 SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.7 SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 7.7 SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 7.7 >SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces pombe|chr 2|||Manual Length = 259 Score = 242 bits (593), Expect = 3e-65 Identities = 115/225 (51%), Positives = 151/225 (67%), Gaps = 1/225 (0%) Frame = -2 Query: 679 RPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKG 500 RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLDK TA Sbjct: 30 RPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQ 89 Query: 499 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKR-PNTIRSGTNTVTKLVEKKKAQ 323 +FK+L KYRPET + P ++ G N V L+E KKA+ Sbjct: 90 VFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAK 149 Query: 322 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRA 143 LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT LA+T V D+ Sbjct: 150 LVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVREEDKN 209 Query: 142 SFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKA 8 + +V A+ NF+ +Y+E R+ WGGG++G K+ A +AK KA A Sbjct: 210 ELASIVSAVDANFSAKYDESRRKWGGGIMGGKTQALLAKRAKAAA 254 >SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosaccharomyces pombe|chr 1|||Manual Length = 125 Score = 54.0 bits (124), Expect = 2e-08 Identities = 23/56 (41%), Positives = 34/56 (60%) Frame = -2 Query: 376 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 209 +R G N TK + + ++ +V+A D +PIE++L LP LC VPY V K+ LG Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87 >SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 154 Score = 54.0 bits (124), Expect = 2e-08 Identities = 33/100 (33%), Positives = 47/100 (47%) Frame = -2 Query: 376 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 197 I G V K V K + LV++A D+ P++++ +P LC VPY K LG + Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASN 113 Query: 196 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 77 K T + V G + SKV E + E YEE+ K Sbjct: 114 TKRPTSCVMI-VPGGKKKDMSKVEE-----YKESYEEIIK 147 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 26.2 bits (55), Expect = 4.4 Identities = 14/52 (26%), Positives = 23/52 (44%) Frame = -1 Query: 662 YWSGHSANS*LVQICKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTGQDYS 507 Y+ + N + Q+ A YP+ + SAS S+P+ P T + S Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347 >SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Par2|Schizosaccharomyces pombe|chr 1|||Manual Length = 627 Score = 25.8 bits (54), Expect = 5.8 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = -2 Query: 583 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 482 KAVL LK P IN F + L + +F++LE Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496 >SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|Schizosaccharomyces pombe|chr 2|||Manual Length = 2337 Score = 25.8 bits (54), Expect = 5.8 Identities = 8/9 (88%), Positives = 8/9 (88%) Frame = +1 Query: 355 LCLCRIGWC 381 LCLC IGWC Sbjct: 2326 LCLCYIGWC 2334 >SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces pombe|chr 3|||Manual Length = 561 Score = 25.4 bits (53), Expect = 7.7 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -1 Query: 599 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 510 PHP SA S ++P P+ P T +DY Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382 >SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Manual Length = 462 Score = 25.4 bits (53), Expect = 7.7 Identities = 16/57 (28%), Positives = 24/57 (42%) Frame = +2 Query: 401 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 571 L F L +S Q FP FS L+NL + ++ Q L + R +T+ Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253 >SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1317 Score = 25.4 bits (53), Expect = 7.7 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Frame = +1 Query: 151 HQTPHLLELSMCMSCGVQVHRGGTCP*QCSMV-HPFYGIT 267 H HL +S C+ ++H G P + HP YG T Sbjct: 803 HMPVHLGSMSTCVRTQAKIHEGKLKPGDVLVTNHPSYGGT 842 >SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 941 Score = 25.4 bits (53), Expect = 7.7 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = -2 Query: 373 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 251 +SG+ +T+ + +V I + +D +E LP LC K+ Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,433,378 Number of Sequences: 5004 Number of extensions: 44658 Number of successful extensions: 141 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 136 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 140 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 315915086 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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