BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11h14r (683 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 286 1e-77 SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 197 8e-51 SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 58 9e-09 SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 45 5e-05 SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 35 0.071 SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35) 31 0.87 SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0 SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5 SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7) 28 6.1 SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 28 6.1 SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 6.1 SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1 SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1 >SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 263 Score = 286 bits (702), Expect = 1e-77 Identities = 131/227 (57%), Positives = 166/227 (73%) Frame = -2 Query: 682 KRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAK 503 KRP+NF IG IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ + Sbjct: 34 KRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTV 93 Query: 502 GLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQ 323 LFK+L KYRPET K+P ++ G N +T LVE KKAQ Sbjct: 94 QLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQ 153 Query: 322 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRA 143 LVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V D+ Sbjct: 154 LVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKN 213 Query: 142 SFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 2 S + ++E++KTN+NER++E+RKHWGGG++G KS A AK+EKAK RE Sbjct: 214 SLNNLIESVKTNYNERFDEIRKHWGGGIMGPKSLAATAKVEKAKLRE 260 >SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) Length = 172 Score = 197 bits (480), Expect = 8e-51 Identities = 91/166 (54%), Positives = 116/166 (69%) Frame = -2 Query: 499 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQL 320 LFK+L KYRPET K+P ++ G N +T LVE KKAQL Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63 Query: 319 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRAS 140 VVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S Sbjct: 64 VVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNS 123 Query: 139 FSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 2 + ++E++KTN+NER++E+RKHWGGG++G KS A AK+EKAK RE Sbjct: 124 LNNLIESVKTNYNERFDEIRKHWGGGIMGPKSLAATAKVEKAKLRE 169 >SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) Length = 187 Score = 57.6 bits (133), Expect = 9e-09 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%) Frame = -2 Query: 376 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 203 +R G N TK + + A+ +V+A D +P+E++L LP LC VPY V+ K+ LG Sbjct: 94 LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATG 153 Query: 202 VHRKTCTCLALTNVESGDRASFSKVVEAIK 113 V R C N S + + AI+ Sbjct: 154 VTRPVIACAVTVNEGSQLKPQIQTLQNAIE 183 >SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) Length = 544 Score = 45.2 bits (102), Expect = 5e-05 Identities = 18/56 (32%), Positives = 30/56 (53%) Frame = -2 Query: 388 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 221 + T+R G V K + K + V++A DV PI+++ +P +C +PY V K Sbjct: 95 KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150 >SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) Length = 427 Score = 34.7 bits (76), Expect = 0.071 Identities = 15/53 (28%), Positives = 29/53 (54%) Frame = -2 Query: 367 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 209 G + K ++K++A L +++++ D V + ALC + G+P V +LG Sbjct: 41 GLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93 >SB_56418| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-35) Length = 1898 Score = 31.1 bits (67), Expect = 0.87 Identities = 16/62 (25%), Positives = 34/62 (54%) Frame = -2 Query: 268 ALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYE 89 A C++ + +++GK + AL+ +KT L + V R S + VV+ ++ +E+Y Sbjct: 1206 ASCKRCRDEFTVIRGKEK--ALLGKKTAEQLKVLGVGPETRESVNAVVKGSDSDIHEQYS 1263 Query: 88 EL 83 ++ Sbjct: 1264 DI 1265 >SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1957 Score = 29.9 bits (64), Expect = 2.0 Identities = 19/50 (38%), Positives = 27/50 (54%) Frame = -2 Query: 232 VKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 83 VKGK+ LG +KT L + V R S S VVEA ++ E+Y ++ Sbjct: 1092 VKGKALLG----KKTAEQLKVLRVGPETRESVSAVVEASDSDIREQYSDI 1137 >SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 490 Score = 29.1 bits (62), Expect = 3.5 Identities = 16/53 (30%), Positives = 29/53 (54%) Frame = -2 Query: 241 YCIVKGKSRLGALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 83 + +++GK + AL+ +KT L + V S S VVEA ++ E+Y ++ Sbjct: 338 FTVIRGKGK--ALLGKKTAEQLKVLRVGPETGESVSAVVEASDSDIREQYSDI 388 >SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7) Length = 189 Score = 28.3 bits (60), Expect = 6.1 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = +3 Query: 57 RTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDST 164 R + +RS S RSL L ST+ EKEA+ D+T Sbjct: 113 RVRKKEIIRSGSSRSLPECLRISTSKEKEAKDIDNT 148 >SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) Length = 437 Score = 28.3 bits (60), Expect = 6.1 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +3 Query: 132 FEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 233 F + +S R +H H+ RCTSAP P T Sbjct: 61 FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94 >SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) Length = 212 Score = 28.3 bits (60), Expect = 6.1 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +2 Query: 386 PLWWRLIFLGNLSFSSFPQPLFPG 457 P WW ++F+G + FS L+PG Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79 >SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 655 Score = 27.9 bits (59), Expect = 8.1 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -1 Query: 575 TSASSESAPSDQPIYPDTG 519 T+ASSE+APS P PD G Sbjct: 43 TAASSEAAPSSAPSMPDYG 61 >SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 832 Score = 27.9 bits (59), Expect = 8.1 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = -2 Query: 628 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 479 SR RW Y R+ KA+LQR ++ I Q T + K +L K Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,313,542 Number of Sequences: 59808 Number of extensions: 367312 Number of successful extensions: 1293 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1161 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1291 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1769412099 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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