BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11h14r (683 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 271 3e-73 At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 267 4e-72 At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 54 9e-08 At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 3e-07 At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 3e-07 At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 4e-07 At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 47 1e-05 At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 36 0.025 At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 36 0.025 At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 35 0.044 At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 35 0.044 At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 35 0.044 At1g49870.1 68414.m05591 expressed protein ; expression supporte... 30 1.2 At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 3.8 At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.8 At4g19060.1 68417.m02808 disease resistance protein-related cont... 27 8.8 At3g09210.1 68416.m01095 KOW domain-containing transcription fac... 27 8.8 >At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) Length = 257 Score = 271 bits (664), Expect = 3e-73 Identities = 127/227 (55%), Positives = 163/227 (71%) Frame = -2 Query: 682 KRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAK 503 +RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK A Sbjct: 26 RRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLAT 85 Query: 502 GLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQ 323 LFK+L KYRPE +P ++ G N VT L+E+ KAQ Sbjct: 86 SLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESK-KPIVVKYGLNHVTYLIEQNKAQ 144 Query: 322 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRA 143 LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V++ D+ Sbjct: 145 LVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVKNEDKL 204 Query: 142 SFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 2 FSK++EAIK NFN++YEE RK WGGG++G+KS A+ E+ A+E Sbjct: 205 EFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKE 251 >At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S RIBOSOMAL PROTEIN L7A - Oryza sativa, SWISSPROT:RL7A_ORYSA Length = 256 Score = 267 bits (655), Expect = 4e-72 Identities = 127/227 (55%), Positives = 161/227 (70%) Frame = -2 Query: 682 KRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAK 503 +RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK A Sbjct: 25 RRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLAT 84 Query: 502 GLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQ 323 LFKIL KYRPE +P ++ G N VT L+E+ KAQ Sbjct: 85 SLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAESK-KPIVVKYGLNHVTYLIEQNKAQ 143 Query: 322 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRA 143 LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT L LT V++ D+ Sbjct: 144 LVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVKNEDKL 203 Query: 142 SFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 2 FSK++EAIK NFN++YEE RK WGGG++G+KS A+ E+ A+E Sbjct: 204 EFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKE 250 >At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628. Length = 156 Score = 54.0 bits (124), Expect = 9e-08 Identities = 26/100 (26%), Positives = 51/100 (51%) Frame = -2 Query: 376 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 197 ++ G V K + + + L VIA ++ PI+++ LP LC + GVPY V K L Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGA 110 Query: 196 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 77 K TC L ++ ++ + +KT++ + +++++ Sbjct: 111 TKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKE 150 >At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628. Length = 128 Score = 52.4 bits (120), Expect = 3e-07 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%) Frame = -2 Query: 376 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 203 ++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94 Query: 202 VHRKTCTCLALTNVESGDRASFSKVVEAIK 113 V R C +N S ++ + +AI+ Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124 >At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628. Length = 128 Score = 52.4 bits (120), Expect = 3e-07 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%) Frame = -2 Query: 376 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 203 ++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94 Query: 202 VHRKTCTCLALTNVESGDRASFSKVVEAIK 113 V R C +N S ++ + +AI+ Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124 >At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628. Length = 128 Score = 52.0 bits (119), Expect = 4e-07 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%) Frame = -2 Query: 376 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 203 ++ G N TK + + ++ +V+A D +P+E++L LP L VPY V K LG Sbjct: 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACD 94 Query: 202 VHRKTCTCLALTNVESGDRASFSKVVEAIK 113 V R C +N S ++ + +AI+ Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124 >At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628. Length = 160 Score = 46.8 bits (106), Expect = 1e-05 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Frame = -2 Query: 358 TVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTC 185 + TK + + ++ VV+A D +P+E++L LP L VPY V K LG V R Sbjct: 73 SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI 132 Query: 184 TCLALTNVESGDRASFSKVVEAIK 113 C +N S ++ + +AI+ Sbjct: 133 ACSVTSNEASQLKSQIQHLKDAIE 156 >At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar to 40S ribosomal protein S12 GI:4263712 from [Arabidopsis thaliana] Length = 144 Score = 35.9 bits (79), Expect = 0.025 Identities = 20/53 (37%), Positives = 27/53 (50%) Frame = -2 Query: 367 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 209 G + KL+EK+ AQLVV+A D + + V + ALC V V LG Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99 >At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar to 40S ribosomal protein S12 GI:4263712 from [Arabidopsis thaliana] Length = 144 Score = 35.9 bits (79), Expect = 0.025 Identities = 20/53 (37%), Positives = 27/53 (50%) Frame = -2 Query: 367 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 209 G + KL+EK+ AQLVV+A D + + V + ALC V V LG Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99 >At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) Length = 144 Score = 35.1 bits (77), Expect = 0.044 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = -2 Query: 367 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 209 G + KL+EK+ AQL V+A D + + V + ALC + V LG Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99 >At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) Length = 144 Score = 35.1 bits (77), Expect = 0.044 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = -2 Query: 367 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 209 G + KL+EK+ AQL V+A D + + V + ALC + V LG Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99 >At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) Length = 144 Score = 35.1 bits (77), Expect = 0.044 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = -2 Query: 367 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 209 G + KL+EK+ AQL V+A D + + V + ALC + V LG Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99 >At1g49870.1 68414.m05591 expressed protein ; expression supported by MPSS Length = 828 Score = 30.3 bits (65), Expect = 1.2 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -2 Query: 112 TNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKA 8 T R E+++ WGG LGN ++KLE+ KA Sbjct: 780 TRRQARDREMQEAWGGLDLGNSIRPSLSKLEREKA 814 >At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC) family protein (MSS2) similar to SMC-related protein MSS2 [Arabidopsis thaliana] GI:9965743; contains Pfam profiles PF02483: SMC family C-terminal domain, PF02463: RecF/RecN/SMC N terminal domain Length = 1053 Score = 28.7 bits (61), Expect = 3.8 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = +2 Query: 371 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 529 + G+ P+ R +F + +S QP P CF L P L LE + +CS++ + Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021 >At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase family protein glucuronosyl transferase homolog, Lycopersicon esculentum, PIR:S39507 ;contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase Length = 460 Score = 28.7 bits (61), Expect = 3.8 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = -1 Query: 233 CQGQVPPRCTCTPQDMHMLSSNKCGVW*PRLLLEGRGSHQDELQRALRGAPQALG 69 C+G VP CT D H+ + VW +LLE + E+++ LR G Sbjct: 362 CEG-VPMICTSCFTDQHVNARYIVDVWRVGMLLERSKMEKKEIEKVLRSVMMEKG 415 >At4g19060.1 68417.m02808 disease resistance protein-related contains Pfam domain, PF00931: NB-ARC domain, a novel signalling motif found in plant resistance gene products Length = 383 Score = 27.5 bits (58), Expect = 8.8 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = -2 Query: 148 RASFSKVVEAIKTNFNERYEE 86 ++ F K +E IK++FNE YE+ Sbjct: 18 KSEFDKELEKIKSSFNEEYEK 38 >At3g09210.1 68416.m01095 KOW domain-containing transcription factor family protein ; est match Length = 333 Score = 27.5 bits (58), Expect = 8.8 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +2 Query: 410 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 505 L N S S P+P+FPGC +R + + + ++ Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,382,331 Number of Sequences: 28952 Number of extensions: 259347 Number of successful extensions: 895 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 858 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 893 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1447936096 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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