SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h14r
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           271   3e-73
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   267   4e-72
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45...    54   9e-08
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45...    52   3e-07
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45...    52   3e-07
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45...    52   4e-07
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45...    47   1e-05
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi...    36   0.025
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi...    36   0.025
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)            35   0.044
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)            35   0.044
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)            35   0.044
At1g49870.1 68414.m05591 expressed protein ; expression supporte...    30   1.2  
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    29   3.8  
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera...    29   3.8  
At4g19060.1 68417.m02808 disease resistance protein-related cont...    27   8.8  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    27   8.8  

>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  271 bits (664), Expect = 3e-73
 Identities = 127/227 (55%), Positives = 163/227 (71%)
 Frame = -2

Query: 682 KRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAK 503
           +RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK  A 
Sbjct: 26  RRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLAT 85

Query: 502 GLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQ 323
            LFK+L KYRPE                          +P  ++ G N VT L+E+ KAQ
Sbjct: 86  SLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESK-KPIVVKYGLNHVTYLIEQNKAQ 144

Query: 322 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRA 143
           LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V++ D+ 
Sbjct: 145 LVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVKNEDKL 204

Query: 142 SFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 2
            FSK++EAIK NFN++YEE RK WGGG++G+KS A+    E+  A+E
Sbjct: 205 EFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKE 251


>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  267 bits (655), Expect = 4e-72
 Identities = 127/227 (55%), Positives = 161/227 (70%)
 Frame = -2

Query: 682 KRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAK 503
           +RPK F IG  + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK  A 
Sbjct: 25  RRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLAT 84

Query: 502 GLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQ 323
            LFKIL KYRPE                          +P  ++ G N VT L+E+ KAQ
Sbjct: 85  SLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAESK-KPIVVKYGLNHVTYLIEQNKAQ 143

Query: 322 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRA 143
           LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT   L LT V++ D+ 
Sbjct: 144 LVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVKNEDKL 203

Query: 142 SFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 2
            FSK++EAIK NFN++YEE RK WGGG++G+KS A+    E+  A+E
Sbjct: 204 EFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKE 250


>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 156

 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 26/100 (26%), Positives = 51/100 (51%)
 Frame = -2

Query: 376 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 197
           ++ G   V K + + +  L VIA ++ PI+++  LP LC + GVPY  V  K  L     
Sbjct: 51  LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGA 110

Query: 196 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 77
            K  TC  L  ++       ++ +  +KT++ +  +++++
Sbjct: 111 TKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKE 150


>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = -2

Query: 376 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 203
           ++ G N  TK + +  ++ VV+A D +P+E++L LP L     VPY  V  K  LG    
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94

Query: 202 VHRKTCTCLALTNVESGDRASFSKVVEAIK 113
           V R    C   +N  S  ++    + +AI+
Sbjct: 95  VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124


>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = -2

Query: 376 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 203
           ++ G N  TK + +  ++ VV+A D +P+E++L LP L     VPY  V  K  LG    
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94

Query: 202 VHRKTCTCLALTNVESGDRASFSKVVEAIK 113
           V R    C   +N  S  ++    + +AI+
Sbjct: 95  VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124


>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = -2

Query: 376 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 203
           ++ G N  TK + +  ++ +V+A D +P+E++L LP L     VPY  V  K  LG    
Sbjct: 35  LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACD 94

Query: 202 VHRKTCTCLALTNVESGDRASFSKVVEAIK 113
           V R    C   +N  S  ++    + +AI+
Sbjct: 95  VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124


>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 160

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = -2

Query: 358 TVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTC 185
           + TK + +  ++ VV+A D +P+E++L LP L     VPY  V  K  LG    V R   
Sbjct: 73  SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI 132

Query: 184 TCLALTNVESGDRASFSKVVEAIK 113
            C   +N  S  ++    + +AI+
Sbjct: 133 ACSVTSNEASQLKSQIQHLKDAIE 156


>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = -2

Query: 367 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 209
           G +   KL+EK+ AQLVV+A D +  + V  + ALC    V    V     LG
Sbjct: 47  GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99


>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
           to 40S ribosomal protein S12 GI:4263712 from
           [Arabidopsis thaliana]
          Length = 144

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = -2

Query: 367 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 209
           G +   KL+EK+ AQLVV+A D +  + V  + ALC    V    V     LG
Sbjct: 47  GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99


>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -2

Query: 367 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 209
           G +   KL+EK+ AQL V+A D +  + V  + ALC    +    V     LG
Sbjct: 47  GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99


>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -2

Query: 367 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 209
           G +   KL+EK+ AQL V+A D +  + V  + ALC    +    V     LG
Sbjct: 47  GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99


>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
          Length = 144

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -2

Query: 367 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 209
           G +   KL+EK+ AQL V+A D +  + V  + ALC    +    V     LG
Sbjct: 47  GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99


>At1g49870.1 68414.m05591 expressed protein ; expression supported
           by MPSS
          Length = 828

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 112 TNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKA 8
           T    R  E+++ WGG  LGN     ++KLE+ KA
Sbjct: 780 TRRQARDREMQEAWGGLDLGNSIRPSLSKLEREKA 814


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 371  SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 529
            + G+ P+  R +F   +  +S  QP  P CF L P  L  LE + +CS++  +
Sbjct: 971  NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein glucuronosyl transferase homolog,
           Lycopersicon esculentum, PIR:S39507 ;contains Pfam
           profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
           transferase
          Length = 460

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 233 CQGQVPPRCTCTPQDMHMLSSNKCGVW*PRLLLEGRGSHQDELQRALRGAPQALG 69
           C+G VP  CT    D H+ +     VW   +LLE     + E+++ LR      G
Sbjct: 362 CEG-VPMICTSCFTDQHVNARYIVDVWRVGMLLERSKMEKKEIEKVLRSVMMEKG 415


>At4g19060.1 68417.m02808 disease resistance protein-related
           contains Pfam domain, PF00931: NB-ARC domain, a novel
           signalling motif found in plant resistance gene products
          Length = 383

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 148 RASFSKVVEAIKTNFNERYEE 86
           ++ F K +E IK++FNE YE+
Sbjct: 18  KSEFDKELEKIKSSFNEEYEK 38


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 410 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 505
           L N S S  P+P+FPGC  +R +  + +  ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,382,331
Number of Sequences: 28952
Number of extensions: 259347
Number of successful extensions: 895
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -