Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h14r
(683 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 271 3e-73
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 267 4e-72
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 54 9e-08
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 3e-07
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 3e-07
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 52 4e-07
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 47 1e-05
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 36 0.025
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 36 0.025
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 35 0.044
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 35 0.044
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 35 0.044
At1g49870.1 68414.m05591 expressed protein ; expression supporte... 30 1.2
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 3.8
At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.8
At4g19060.1 68417.m02808 disease resistance protein-related cont... 27 8.8
At3g09210.1 68416.m01095 KOW domain-containing transcription fac... 27 8.8
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 271 bits (664), Expect = 3e-73
Identities = 127/227 (55%), Positives = 163/227 (71%)
Frame = -2
Query: 682 KRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAK 503
+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK A
Sbjct: 26 RRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLAT 85
Query: 502 GLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQ 323
LFK+L KYRPE +P ++ G N VT L+E+ KAQ
Sbjct: 86 SLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSESK-KPIVVKYGLNHVTYLIEQNKAQ 144
Query: 322 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRA 143
LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V++ D+
Sbjct: 145 LVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVKNEDKL 204
Query: 142 SFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 2
FSK++EAIK NFN++YEE RK WGGG++G+KS A+ E+ A+E
Sbjct: 205 EFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKE 251
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 267 bits (655), Expect = 4e-72
Identities = 127/227 (55%), Positives = 161/227 (70%)
Frame = -2
Query: 682 KRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAK 503
+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLDK A
Sbjct: 25 RRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLDKNLAT 84
Query: 502 GLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKKKAQ 323
LFKIL KYRPE +P ++ G N VT L+E+ KAQ
Sbjct: 85 SLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAESK-KPIVVKYGLNHVTYLIEQNKAQ 143
Query: 322 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRA 143
LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT L LT V++ D+
Sbjct: 144 LVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVKNEDKL 203
Query: 142 SFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 2
FSK++EAIK NFN++YEE RK WGGG++G+KS A+ E+ A+E
Sbjct: 204 EFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKE 250
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 54.0 bits (124), Expect = 9e-08
Identities = 26/100 (26%), Positives = 51/100 (51%)
Frame = -2
Query: 376 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 197
++ G V K + + + L VIA ++ PI+++ LP LC + GVPY V K L
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGA 110
Query: 196 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRK 77
K TC L ++ ++ + +KT++ + +++++
Sbjct: 111 TKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKE 150
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = -2
Query: 376 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 203
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 202 VHRKTCTCLALTNVESGDRASFSKVVEAIK 113
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = -2
Query: 376 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 203
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 202 VHRKTCTCLALTNVESGDRASFSKVVEAIK 113
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = -2
Query: 376 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 203
++ G N TK + + ++ +V+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACD 94
Query: 202 VHRKTCTCLALTNVESGDRASFSKVVEAIK 113
V R C +N S ++ + +AI+
Sbjct: 95 VTRPVIACSVTSNEASQLKSQIQHLKDAIE 124
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = -2
Query: 358 TVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTC 185
+ TK + + ++ VV+A D +P+E++L LP L VPY V K LG V R
Sbjct: 73 SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVI 132
Query: 184 TCLALTNVESGDRASFSKVVEAIK 113
C +N S ++ + +AI+
Sbjct: 133 ACSVTSNEASQLKSQIQHLKDAIE 156
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = -2
Query: 367 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 209
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = -2
Query: 367 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 209
G + KL+EK+ AQLVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 367 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 209
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 367 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 209
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 367 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 209
G + KL+EK+ AQL V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At1g49870.1 68414.m05591 expressed protein ; expression supported
by MPSS
Length = 828
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 112 TNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKA 8
T R E+++ WGG LGN ++KLE+ KA
Sbjct: 780 TRRQARDREMQEAWGGLDLGNSIRPSLSKLEREKA 814
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 371 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 529
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At3g55700.1 68416.m06188 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glucuronosyl transferase homolog,
Lycopersicon esculentum, PIR:S39507 ;contains Pfam
profile: PF00201 UDP-glucoronosyl and UDP-glucosyl
transferase
Length = 460
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 233 CQGQVPPRCTCTPQDMHMLSSNKCGVW*PRLLLEGRGSHQDELQRALRGAPQALG 69
C+G VP CT D H+ + VW +LLE + E+++ LR G
Sbjct: 362 CEG-VPMICTSCFTDQHVNARYIVDVWRVGMLLERSKMEKKEIEKVLRSVMMEKG 415
>At4g19060.1 68417.m02808 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 383
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 148 RASFSKVVEAIKTNFNERYEE 86
++ F K +E IK++FNE YE+
Sbjct: 18 KSEFDKELEKIKSSFNEEYEK 38
>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
family protein ; est match
Length = 333
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 410 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 505
L N S S P+P+FPGC +R + + + ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,382,331
Number of Sequences: 28952
Number of extensions: 259347
Number of successful extensions: 895
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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