Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h13r
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    27   2.6  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    27   2.6  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.9  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   5.9  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   7.9  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 383  AVVDVEFGFDVIHQIQDVFDDRLLLCLDHFVH-LFDLNFGLGIDLGR 520
            A VDVE    V   I++ F+DR +L + H ++ + D N  L +D G+
Sbjct: 1389 AAVDVETDAIVQRTIRERFNDRTILTIAHRINTVMDSNRILVLDHGK 1435


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 541 MGTREGVAAKIDAETKVKIEEMNKMVQTQKE 449
           M TR+G A  +D   +V  EEM+K++Q  +E
Sbjct: 420 MSTRKGKAVFLDDIMEVAKEEMHKVMQKNEE 450


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 399 SSGLMSYTRFKTSLMTASFCVWTILFISSILTLVSASILA 518
           SSGL+     K     +S   + +L I S LTLV +S ++
Sbjct: 732 SSGLLELIALKIGNAVSSLNTFRVLLIFSALTLVVSSFIS 771


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = -3

Query: 684 KNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRPRSM 505
           +N  R+K  R+ +E+RN  +  R R+  K K     + GS  +++ + W+  +  R  + 
Sbjct: 167 ENRERKKRWREQNEERNKDNDLRCRVNKKAK----KLFGSEPSIEKTNWIEAEFTRRHTK 222

Query: 504 PRPK 493
            + K
Sbjct: 223 RKEK 226


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 176 LAKKLHFDISFSAPCCVFF*LSRLQENLPTYACYNDL 286
           L + LH  +SFS    + + L  L ++LP+Y+ ++ L
Sbjct: 579 LGRSLHSCMSFSTLSEIRYSLRELVQDLPSYSLFDTL 615


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,743
Number of Sequences: 5004
Number of extensions: 42316
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)