BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11h13r (692 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_05_0321 + 24091997-24092530 30 2.0 12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031... 29 2.6 02_05_1056 - 33804717-33804871,33805352-33805418,33805508-338055... 28 6.1 >05_05_0321 + 24091997-24092530 Length = 177 Score = 29.9 bits (64), Expect = 2.0 Identities = 19/63 (30%), Positives = 31/63 (49%) Frame = -3 Query: 684 KNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRPRSM 505 + A S RQ ++ A +R RRL+ + + S GS + + +VPG + R + Sbjct: 91 EEAAEAASRRQQQQQAAAAAR-ERRLRRRRSDSRGSCGGSGDGVLLNFYVPGLLTRSMTT 149 Query: 504 PRP 496 PRP Sbjct: 150 PRP 152 >12_02_1069 + 25801309-25801433,25802429-25802620,25803130-25803159, 25803426-25803500,25803599-25804373,25804549-25804614, 25804746-25804811,25804898-25805140,25805407-25805502 Length = 555 Score = 29.5 bits (63), Expect = 2.6 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +1 Query: 583 VCTFQLHLEPPPWPALGVSLFASL 654 V FQ + PPPWPA G + F + Sbjct: 231 VAAFQSRMMPPPWPARGKAEFGDV 254 >02_05_1056 - 33804717-33804871,33805352-33805418,33805508-33805576, 33806414-33806548,33806609-33806680,33807281-33807375, 33807778-33807859,33807949-33807999,33808107-33808187, 33808534-33808575,33808705-33808803,33809044-33809115, 33809166-33809270 Length = 374 Score = 28.3 bits (60), Expect = 6.1 Identities = 17/50 (34%), Positives = 27/50 (54%) Frame = -2 Query: 265 CRQVFLEPT*LKKNTARRRK*NVKVQFFCQVIYCMRNQLGTIPSVENSLR 116 C Q FLE + + ++ R + K++F QV ++N L TI SV +R Sbjct: 104 CEQFFLEMMKVPRVESKLRILSFKIKFLTQVA-DLKNSLNTINSVAEEVR 152 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,167,231 Number of Sequences: 37544 Number of extensions: 244200 Number of successful extensions: 593 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 580 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 593 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1768474200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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