BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11h13r (692 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_45236| Best HMM Match : PRP38 (HMM E-Value=0) 31 0.89 SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89 SB_31407| Best HMM Match : TolA (HMM E-Value=2.5) 31 1.2 SB_43805| Best HMM Match : YscO (HMM E-Value=6) 31 1.2 SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07) 29 2.7 SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7 SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2 SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08) 28 6.2 SB_24780| Best HMM Match : Linker_histone (HMM E-Value=0.0023) 28 8.3 SB_1788| Best HMM Match : Linker_histone (HMM E-Value=0.0023) 28 8.3 >SB_45236| Best HMM Match : PRP38 (HMM E-Value=0) Length = 381 Score = 31.1 bits (67), Expect = 0.89 Identities = 17/43 (39%), Positives = 25/43 (58%) Frame = -3 Query: 672 RRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPS 544 RRKS + ++R + SR RRR K +S +RS K S+ + S Sbjct: 317 RRKSRSRSRDRRRSRSRERRRDDRKRRSRERSPKRRSREREES 359 >SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 103 Score = 31.1 bits (67), Expect = 0.89 Identities = 14/51 (27%), Positives = 29/51 (56%) Frame = -2 Query: 532 REGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 380 ++ AAK + +++IE +NK ++ KE + D + Y ++ E + N+ L Sbjct: 3 KKAKAAKREELKEMRIEMVNKAIEESKEFITPDDEKIAYALENETNYNFAL 53 >SB_31407| Best HMM Match : TolA (HMM E-Value=2.5) Length = 315 Score = 30.7 bits (66), Expect = 1.2 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%) Frame = -2 Query: 544 HMGTREGVAAKIDAETK-VKIEEMNKMVQTQKEAVIKDVLN--LVYDIKPELHINYRL 380 H ++ AAK + E K ++IE +NK ++ KE + D L+ + Y ++ E + N+ L Sbjct: 136 HQMKKKAKAAKREEELKEMRIEIVNKAIEESKEFITPDNLDKKIAYALENETNYNFAL 193 >SB_43805| Best HMM Match : YscO (HMM E-Value=6) Length = 243 Score = 30.7 bits (66), Expect = 1.2 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%) Frame = -2 Query: 544 HMGTREGVAAKIDAETK-VKIEEMNKMVQTQKEAVIKDVLN--LVYDIKPELHINYRL 380 H ++ AAK + E K ++IE +NK ++ KE + D L+ + Y ++ E + N+ L Sbjct: 136 HQMKKKAKAAKREEELKEMRIEIVNKAIEESKEFITPDNLDKKIAYALENETNYNFAL 193 >SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07) Length = 1118 Score = 29.5 bits (63), Expect = 2.7 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = -3 Query: 621 PRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRPRSMP 502 PRR M KSTD+ +K ST + G +RPR P Sbjct: 474 PRRLRDMSTKSTDKLKASPTKLRNKSTRMRGGPVRPRDSP 513 >SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 418 Score = 28.7 bits (61), Expect = 4.7 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +1 Query: 574 HAPVCTFQLHLEPPPW 621 HAP+CT ++ L PPW Sbjct: 201 HAPLCTKRVRLSKPPW 216 >SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 752 Score = 28.3 bits (60), Expect = 6.2 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -3 Query: 573 KGSSKNLKPSTWVPGKVLRPRSMPR 499 + +SKNL P W PG VL+ + R Sbjct: 661 RDTSKNLDPKRWGPGPVLKAEEVDR 685 >SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08) Length = 469 Score = 28.3 bits (60), Expect = 6.2 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = +1 Query: 304 FFLNKGDQIKLIRRKLCIKYNNLLNLSGS*CGVRV*C 414 FF + D + I+ CI N+L + G+ CG R C Sbjct: 385 FFQQRCDSLLCIKGSKCINPRNILPVDGTPCGNRKWC 421 >SB_24780| Best HMM Match : Linker_histone (HMM E-Value=0.0023) Length = 186 Score = 27.9 bits (59), Expect = 8.3 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -3 Query: 690 LLKNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVK 571 L K + + + S+KRNA RPR K K ++ R VK Sbjct: 126 LTKKSKSKSRKSKASKKRNARRRPRSARKTKSRAPARRVK 165 >SB_1788| Best HMM Match : Linker_histone (HMM E-Value=0.0023) Length = 186 Score = 27.9 bits (59), Expect = 8.3 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -3 Query: 690 LLKNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVK 571 L K + + + S+KRNA RPR K K ++ R VK Sbjct: 126 LTKKSKSKSRKSKASKKRNARRRPRSARKTKSRAPARRVK 165 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,485,222 Number of Sequences: 59808 Number of extensions: 286329 Number of successful extensions: 697 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 655 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 695 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1805522550 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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