Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h13r
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)                       31   0.89 
SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_31407| Best HMM Match : TolA (HMM E-Value=2.5)                      31   1.2  
SB_43805| Best HMM Match : YscO (HMM E-Value=6)                        31   1.2  
SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)           29   2.7  
SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08)            28   6.2  
SB_24780| Best HMM Match : Linker_histone (HMM E-Value=0.0023)         28   8.3  
SB_1788| Best HMM Match : Linker_histone (HMM E-Value=0.0023)          28   8.3  

>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
          Length = 381

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -3

Query: 672 RRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPS 544
           RRKS  +  ++R + SR RRR   K +S +RS K  S+  + S
Sbjct: 317 RRKSRSRSRDRRRSRSRERRRDDRKRRSRERSPKRRSREREES 359


>SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = -2

Query: 532 REGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 380
           ++  AAK +   +++IE +NK ++  KE +  D   + Y ++ E + N+ L
Sbjct: 3   KKAKAAKREELKEMRIEMVNKAIEESKEFITPDDEKIAYALENETNYNFAL 53


>SB_31407| Best HMM Match : TolA (HMM E-Value=2.5)
          Length = 315

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = -2

Query: 544 HMGTREGVAAKIDAETK-VKIEEMNKMVQTQKEAVIKDVLN--LVYDIKPELHINYRL 380
           H   ++  AAK + E K ++IE +NK ++  KE +  D L+  + Y ++ E + N+ L
Sbjct: 136 HQMKKKAKAAKREEELKEMRIEIVNKAIEESKEFITPDNLDKKIAYALENETNYNFAL 193


>SB_43805| Best HMM Match : YscO (HMM E-Value=6)
          Length = 243

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = -2

Query: 544 HMGTREGVAAKIDAETK-VKIEEMNKMVQTQKEAVIKDVLN--LVYDIKPELHINYRL 380
           H   ++  AAK + E K ++IE +NK ++  KE +  D L+  + Y ++ E + N+ L
Sbjct: 136 HQMKKKAKAAKREEELKEMRIEIVNKAIEESKEFITPDNLDKKIAYALENETNYNFAL 193


>SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)
          Length = 1118

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 621 PRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRPRSMP 502
           PRR   M  KSTD+     +K    ST + G  +RPR  P
Sbjct: 474 PRRLRDMSTKSTDKLKASPTKLRNKSTRMRGGPVRPRDSP 513


>SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 574 HAPVCTFQLHLEPPPW 621
           HAP+CT ++ L  PPW
Sbjct: 201 HAPLCTKRVRLSKPPW 216


>SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 573 KGSSKNLKPSTWVPGKVLRPRSMPR 499
           + +SKNL P  W PG VL+   + R
Sbjct: 661 RDTSKNLDPKRWGPGPVLKAEEVDR 685


>SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08)
          Length = 469

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 304 FFLNKGDQIKLIRRKLCIKYNNLLNLSGS*CGVRV*C 414
           FF  + D +  I+   CI   N+L + G+ CG R  C
Sbjct: 385 FFQQRCDSLLCIKGSKCINPRNILPVDGTPCGNRKWC 421


>SB_24780| Best HMM Match : Linker_histone (HMM E-Value=0.0023)
          Length = 186

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 690 LLKNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVK 571
           L K +  +    + S+KRNA  RPR   K K ++  R VK
Sbjct: 126 LTKKSKSKSRKSKASKKRNARRRPRSARKTKSRAPARRVK 165


>SB_1788| Best HMM Match : Linker_histone (HMM E-Value=0.0023)
          Length = 186

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 690 LLKNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVK 571
           L K +  +    + S+KRNA  RPR   K K ++  R VK
Sbjct: 126 LTKKSKSKSRKSKASKKRNARRRPRSARKTKSRAPARRVK 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,485,222
Number of Sequences: 59808
Number of extensions: 286329
Number of successful extensions: 697
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)