Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h13r
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpa...    58   8e-09
AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical ...    29   4.2  
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpase
           protein 10 protein.
          Length = 126

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 38/104 (36%), Positives = 52/104 (50%)
 Frame = -2

Query: 691 AAEKRAAEKVSXXXXXXXXXXXXXXXXXQDEVXXXXXXXXXXXXXXEAKHMGTREGVAAK 512
           AAEKRAAEK++                 Q EV              E +++GT+E + +K
Sbjct: 13  AAEKRAAEKINEARKRKLQRTKQAKQEAQAEVEKYKQQREAEFKAFEQQYLGTKEDIESK 72

Query: 511 IDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 380
           I  +T+ +I  M + V   K+AVI  +L LV DIKPELH N  L
Sbjct: 73  IRRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTL 116


>AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical
           protein ZK355.4 protein.
          Length = 485

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 134 TWNGTELISHTINYLAKKLHFDISFSAPCCVFF*LSRLQEN 256
           TW+  ELIS   NY  K +  +I   A  C+F+ L +L  N
Sbjct: 324 TWDRVELISLPANYCTKDVG-NIRDWARVCIFYTLEKLPTN 363


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 609 LKMKLKSTDRSVK-GSSKNLKPSTWVPGKVLRPRSMPR 499
           + +K  S   S K  SS+ LKP T++P     P SMP+
Sbjct: 3   INIKYSSKFSSSKTSSSEELKPKTYIPAYYQPPVSMPK 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,715,368
Number of Sequences: 27780
Number of extensions: 230641
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)