Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h13r
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39785.2 68418.m04819 expressed protein                             28   5.1  
At5g39785.1 68418.m04818 expressed protein                             28   5.1  
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f...    28   6.8  
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro...    28   6.8  
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ...    28   6.8  

>At5g39785.2 68418.m04819 expressed protein
          Length = 607

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
 Frame = +2

Query: 74  DYISYFFSYLNFKLS*RILN---------TWNGTELISHTINYLAKKLHFDISFSA-PC 220
           D + +FFS ++ KL  R+LN          W   +L    IN++ ++LH D SF   PC
Sbjct: 551 DQVLHFFSQVDMKLVTRVLNMSKLTRDHLVWCHNKLTK--INFVNRRLHLDPSFCLFPC 607


>At5g39785.1 68418.m04818 expressed protein
          Length = 606

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
 Frame = +2

Query: 74  DYISYFFSYLNFKLS*RILN---------TWNGTELISHTINYLAKKLHFDISFSA-PC 220
           D + +FFS ++ KL  R+LN          W   +L    IN++ ++LH D SF   PC
Sbjct: 550 DQVLHFFSQVDMKLVTRVLNMSKLTRDHLVWCHNKLTK--INFVNRRLHLDPSFCLFPC 606


>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
           factor (HB-14) identical to homeodomain transcription
           factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
           thaliana];
          Length = 852

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = -2

Query: 520 AAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYD---IKPELH 395
           AA++    + K+  MNK++  + + + K V NLVY+   +K +LH
Sbjct: 87  AARLQTVNR-KLNAMNKLLMEENDRLQKQVSNLVYENGHMKHQLH 130


>At2g25050.1 68415.m02996 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 1111

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -2

Query: 265 CRQVFLEPT*LKKNTARRRK*NVKVQFFCQVIYCMRNQLGTIPSVENSLR 116
           C Q FLE   + +   + R  + K+QF  QV   +R  L TI S  N +R
Sbjct: 851 CEQFFLELLKVPRVETKLRVFSFKIQFHSQVT-DLRRGLNTIHSAANEVR 899


>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1116

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -3

Query: 678 ALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRPRSMPR 499
           AL  K +    ++RN       RLK  LK    + K    +   STW    +L+  SMP 
Sbjct: 719 ALDEKYSEAFLDRRNLTEADLERLKHALKLLSEAEKQLRVSTDRSTWFIATLLQLGSMPS 778

Query: 498 P 496
           P
Sbjct: 779 P 779


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,744,377
Number of Sequences: 28952
Number of extensions: 208309
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)