Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h13f
(659 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0) 31 0.83
SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_31407| Best HMM Match : TolA (HMM E-Value=2.5) 31 1.1
SB_43805| Best HMM Match : YscO (HMM E-Value=6) 31 1.1
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71) 30 1.9
SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07) 29 2.5
SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08) 28 5.9
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_24780| Best HMM Match : Linker_histone (HMM E-Value=0.0023) 28 7.7
SB_1788| Best HMM Match : Linker_histone (HMM E-Value=0.0023) 28 7.7
>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
Length = 381
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 128 RRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPS 256
RRKS + ++R + SR RRR K +S +RS K S+ + S
Sbjct: 317 RRKSRSRSRDRRRSRSRERRRDDRKRRSRERSPKRRSREREES 359
>SB_43807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 31.1 bits (67), Expect = 0.83
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +1
Query: 268 REGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 420
++ AAK + +++IE +NK ++ KE + D + Y ++ E + N+ L
Sbjct: 3 KKAKAAKREELKEMRIEMVNKAIEESKEFITPDDEKIAYALENETNYNFAL 53
>SB_31407| Best HMM Match : TolA (HMM E-Value=2.5)
Length = 315
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +1
Query: 256 HMGTREGVAAKIDAETK-VKIEEMNKMVQTQKEAVIKDVLN--LVYDIKPELHINYRL 420
H ++ AAK + E K ++IE +NK ++ KE + D L+ + Y ++ E + N+ L
Sbjct: 136 HQMKKKAKAAKREEELKEMRIEIVNKAIEESKEFITPDNLDKKIAYALENETNYNFAL 193
>SB_43805| Best HMM Match : YscO (HMM E-Value=6)
Length = 243
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +1
Query: 256 HMGTREGVAAKIDAETK-VKIEEMNKMVQTQKEAVIKDVLN--LVYDIKPELHINYRL 420
H ++ AAK + E K ++IE +NK ++ KE + D L+ + Y ++ E + N+ L
Sbjct: 136 HQMKKKAKAAKREEELKEMRIEIVNKAIEESKEFITPDNLDKKIAYALENETNYNFAL 193
>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
Length = 1281
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 83 RPKESNSF*LLKNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGS 235
RP++++S K A R + ARQ S + N ++ K + T R +K S
Sbjct: 405 RPRQASSKTKYKQAARPRQARQASHRTNKLQDQNKQDKQAARPTSRRIKTS 455
>SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)
Length = 1118
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 179 PRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRPRSMP 298
PRR M KSTD+ +K ST + G +RPR P
Sbjct: 474 PRRLRDMSTKSTDKLKASPTKLRNKSTRMRGGPVRPRDSP 513
>SB_5806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 28.7 bits (61), Expect = 4.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 226 HAPVCTFQLHLEPPPW 179
HAP+CT ++ L PPW
Sbjct: 201 HAPLCTKRVRLSKPPW 216
>SB_25447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 227 KGSSKNLKPSTWVPGKVLRPRSMPR 301
+ +SKNL P W PG VL+ + R
Sbjct: 661 RDTSKNLDPKRWGPGPVLKAEEVDR 685
>SB_11766| Best HMM Match : Reprolysin (HMM E-Value=1.6e-08)
Length = 469
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 496 FFLNKGDQIKLIRRKLCIKYNNLLNLSGS*CGVRV*C 386
FF + D + I+ CI N+L + G+ CG R C
Sbjct: 385 FFQQRCDSLLCIKGSKCINPRNILPVDGTPCGNRKWC 421
>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2978
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -2
Query: 175 ALGVSLFASLPR*LSPQRVFQQLEAVGFLGSDSPYRKHTKTM*TKTE 35
ALG+ + + ++ + V +++ + F+ + +PYRKHT M K E
Sbjct: 2447 ALGLIKEVMVDKRVNGRPVGEEIRRLHFIAACNPYRKHTDQMIHKLE 2493
>SB_24780| Best HMM Match : Linker_histone (HMM E-Value=0.0023)
Length = 186
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 110 LLKNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVK 229
L K + + + S+KRNA RPR K K ++ R VK
Sbjct: 126 LTKKSKSKSRKSKASKKRNARRRPRSARKTKSRAPARRVK 165
>SB_1788| Best HMM Match : Linker_histone (HMM E-Value=0.0023)
Length = 186
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 110 LLKNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVK 229
L K + + + S+KRNA RPR K K ++ R VK
Sbjct: 126 LTKKSKSKSRKSKASKKRNARRRPRSARKTKSRAPARRVK 165
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,754,880
Number of Sequences: 59808
Number of extensions: 287582
Number of successful extensions: 843
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -