Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h13f
         (659 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075202-1|AAL68070.1|  117|Drosophila melanogaster AT14009p pro...   104   9e-23
AF143200-1|AAD32690.1|  117|Drosophila melanogaster vacuolar pro...   104   9e-23
AE014297-2689|AAF55686.1|  117|Drosophila melanogaster CG6213-PA...   104   9e-23

>AY075202-1|AAL68070.1|  117|Drosophila melanogaster AT14009p
           protein.
          Length = 117

 Score =  104 bits (250), Expect = 9e-23
 Identities = 53/114 (46%), Positives = 71/114 (62%)
 Frame = +1

Query: 73  MASQTQGIQQLLAAEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXXA 252
           MASQTQGIQQLLAAEK+AAEKV+                  +E+               A
Sbjct: 1   MASQTQGIQQLLAAEKKAAEKVAEARKRKARRLKQAKDEATEEIEKFRQERERAFKEFEA 60

Query: 253 KHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINY 414
           KHMG+REGVAAKIDA+ +VK+ +M++ +QT+K+  I ++L  VY+I PE+H NY
Sbjct: 61  KHMGSREGVAAKIDADIRVKLADMDRAIQTRKDPFILEILQYVYNISPEVHKNY 114


>AF143200-1|AAD32690.1|  117|Drosophila melanogaster vacuolar
           proton-motive ATPasesubunit G VHA13 protein.
          Length = 117

 Score =  104 bits (250), Expect = 9e-23
 Identities = 53/114 (46%), Positives = 71/114 (62%)
 Frame = +1

Query: 73  MASQTQGIQQLLAAEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXXA 252
           MASQTQGIQQLLAAEK+AAEKV+                  +E+               A
Sbjct: 1   MASQTQGIQQLLAAEKKAAEKVAEARKRKARRLKQAKDEATEEIEKFRQERERAFKEFEA 60

Query: 253 KHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINY 414
           KHMG+REGVAAKIDA+ +VK+ +M++ +QT+K+  I ++L  VY+I PE+H NY
Sbjct: 61  KHMGSREGVAAKIDADIRVKLADMDRAIQTRKDPFILEILQYVYNISPEVHKNY 114


>AE014297-2689|AAF55686.1|  117|Drosophila melanogaster CG6213-PA
           protein.
          Length = 117

 Score =  104 bits (250), Expect = 9e-23
 Identities = 53/114 (46%), Positives = 71/114 (62%)
 Frame = +1

Query: 73  MASQTQGIQQLLAAEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXXA 252
           MASQTQGIQQLLAAEK+AAEKV+                  +E+               A
Sbjct: 1   MASQTQGIQQLLAAEKKAAEKVAEARKRKARRLKQAKDEATEEIEKFRQERERAFKEFEA 60

Query: 253 KHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINY 414
           KHMG+REGVAAKIDA+ +VK+ +M++ +QT+K+  I ++L  VY+I PE+H NY
Sbjct: 61  KHMGSREGVAAKIDADIRVKLADMDRAIQTRKDPFILEILQYVYNISPEVHKNY 114


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,246,368
Number of Sequences: 53049
Number of extensions: 430056
Number of successful extensions: 1292
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)