BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11h13f (659 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U88173-4|AAK21386.1| 126|Caenorhabditis elegans Vacuolar h atpa... 80 1e-15 L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr... 28 6.8 >U88173-4|AAK21386.1| 126|Caenorhabditis elegans Vacuolar h atpase protein 10 protein. Length = 126 Score = 80.2 bits (189), Expect = 1e-15 Identities = 48/116 (41%), Positives = 62/116 (53%) Frame = +1 Query: 73 MASQTQGIQQLLAAEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXXA 252 MASQTQGIQQLLAAEKRAAEK++ EV Sbjct: 1 MASQTQGIQQLLAAEKRAAEKINEARKRKLQRTKQAKQEAQAEVEKYKQQREAEFKAFEQ 60 Query: 253 KHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 420 +++GT+E + +KI +T+ +I M + V K+AVI +L LV DIKPELH N L Sbjct: 61 QYLGTKEDIESKIRRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTL 116 >L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical protein ZK1236.3a protein. Length = 1000 Score = 27.9 bits (59), Expect = 6.8 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Frame = +2 Query: 191 LKMKLKSTDRSVK-GSSKNLKPSTWVPGKVLRPRSMPR 301 + +K S S K SS+ LKP T++P P SMP+ Sbjct: 3 INIKYSSKFSSSKTSSSEELKPKTYIPAYYQPPVSMPK 40 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,618,545 Number of Sequences: 27780 Number of extensions: 222494 Number of successful extensions: 651 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 626 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 650 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1476380920 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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