Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h13f
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04390.1 68417.m00627 Ulp1 protease family protein contains P...    29   3.6  
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f...    28   6.3  
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ...    28   6.3  
At4g23710.1 68417.m03412 vacuolar ATP synthase subunit G 2 (VATG...    27   8.4  

>At4g04390.1 68417.m00627 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 963

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 59  CVFSIWRVRPKESNSF*LLKNALRRKSARQGSEKRNA 169
           CV S   V PK+     +LK    RKSA+QG  K+N+
Sbjct: 340 CVPSEVVVAPKKRKKSAMLKGGRGRKSAKQGRFKKNS 376


>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
           factor (HB-14) identical to homeodomain transcription
           factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
           thaliana];
          Length = 852

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +1

Query: 280 AAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYD---IKPELH 405
           AA++    + K+  MNK++  + + + K V NLVY+   +K +LH
Sbjct: 87  AARLQTVNR-KLNAMNKLLMEENDRLQKQVSNLVYENGHMKHQLH 130


>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1116

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +2

Query: 122 ALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRPRSMPR 301
           AL  K +    ++RN       RLK  LK    + K    +   STW    +L+  SMP 
Sbjct: 719 ALDEKYSEAFLDRRNLTEADLERLKHALKLLSEAEKQLRVSTDRSTWFIATLLQLGSMPS 778

Query: 302 P 304
           P
Sbjct: 779 P 779


>At4g23710.1 68417.m03412 vacuolar ATP synthase subunit G 2 (VATG2)
           / V-ATPase G subunit 2 (VAG2) / vacuolar proton pump G
           subunit 2 identical to Swiss-Prot:O82629 vacuolar ATP
           synthase subunit G 2 (V-ATPase G subunit 2, Vacuolar
           proton pump G subunit 2) [Arabidopsis thaliana]
          Length = 106

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
 Frame = +1

Query: 82  QTQGIQQLLAAEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXXAKHM 261
           ++ GIQQLLAAE+ A + V+                   EV                   
Sbjct: 2   ESAGIQQLLAAEREAQQIVNAARTAKMTRLKQAKEEAETEVAEHKTSTEQGFQRKLEATS 61

Query: 262 GTREGVAAKIDAETKVKIEEM-NKMVQTQKEAV 357
           G       +++ ET  KIE++ N+  +  K+ V
Sbjct: 62  GDSGANVKRLEQETDAKIEQLKNEATRISKDVV 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,819,554
Number of Sequences: 28952
Number of extensions: 207749
Number of successful extensions: 586
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)