BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11h12f (338 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 37 7e-04 SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 35 0.003 SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 35 0.004 SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 34 0.007 SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.009 SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 30 0.084 SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 30 0.084 SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 30 0.11 SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 30 0.11 SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 29 0.26 SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 28 0.34 SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 0.78 SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 27 0.78 SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr... 26 1.4 SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 26 1.8 SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 1.8 SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 2.4 SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 2.4 SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 25 3.2 SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 3.2 SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 3.2 SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 4.2 SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 24 5.5 SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 24 5.5 SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 24 7.3 SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 24 7.3 SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual 24 7.3 SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 23 9.6 SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 23 9.6 SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 23 9.6 >SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 456 Score = 37.1 bits (82), Expect = 7e-04 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +1 Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 276 +++CA+C P +L C HVFC C+ Sbjct: 357 DFECAICSNVAYKPVRLGCSHVFCLHCL 384 >SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 311 Score = 35.1 bits (77), Expect = 0.003 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +1 Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCVKV 282 C +C +K ++P LS G VFC+ C++V Sbjct: 257 CKICGEKIKNPAVLSTGFVFCYPCIQV 283 >SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosaccharomyces pombe|chr 2|||Manual Length = 269 Score = 34.7 bits (76), Expect = 0.004 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +1 Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 276 +Y C +CL ++ + CGH+FC C+ Sbjct: 203 DYKCVICLDSPENLSCTPCGHIFCNFCI 230 >SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 306 Score = 33.9 bits (74), Expect = 0.007 Identities = 9/25 (36%), Positives = 16/25 (64%) Frame = +1 Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCV 276 C++C++ P CGH+FC+ C+ Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCI 280 >SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 468 Score = 33.5 bits (73), Expect = 0.009 Identities = 9/26 (34%), Positives = 15/26 (57%) Frame = +1 Query: 199 DCAVCLQKCQHPTKLSCGHVFCFLCV 276 +C +C + Q P CGH +C+ C+ Sbjct: 84 ECPICTEALQRPFTTHCGHTYCYECL 109 >SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 673 Score = 30.3 bits (65), Expect = 0.084 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = +1 Query: 202 CAVCLQKCQHPTKLS-CGHVFCFLCV 276 C CL++ ++S CGHV+CF C+ Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCL 239 >SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces pombe|chr 1|||Manual Length = 897 Score = 30.3 bits (65), Expect = 0.084 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Frame = +1 Query: 193 EYDCAVCLQKCQHPT-KLSCGHVFCFLCVKV 282 +++C+VCL C P + CGH C C+ + Sbjct: 603 DFNCSVCLDPCLAPVFIIPCGHFTCQECMSM 633 >SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pombe|chr 2|||Manual Length = 387 Score = 29.9 bits (64), Expect = 0.11 Identities = 9/26 (34%), Positives = 14/26 (53%) Frame = +1 Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCVK 279 C +C + + P SC H FC C++ Sbjct: 29 CLICHEYFRAPLITSCSHTFCSFCIR 54 >SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 486 Score = 29.9 bits (64), Expect = 0.11 Identities = 10/28 (35%), Positives = 13/28 (46%) Frame = +1 Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 276 E +C +C P CGH FC C+ Sbjct: 166 ELECQICFGMLYDPVVSPCGHTFCGPCL 193 >SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 533 Score = 28.7 bits (61), Expect = 0.26 Identities = 9/29 (31%), Positives = 16/29 (55%) Frame = +1 Query: 187 NMEYDCAVCLQKCQHPTKLSCGHVFCFLC 273 ++ + C +C + + P +CGH FC C Sbjct: 249 DIPFVCLICKKDYRSPIATTCGHHFCEQC 277 >SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizosaccharomyces pombe|chr 3|||Manual Length = 963 Score = 28.3 bits (60), Expect = 0.34 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = +1 Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCV 276 C +C + Q + C H FC LCV Sbjct: 711 CKICDEVAQDAIESRCHHTFCRLCV 735 >SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 268 Score = 27.1 bits (57), Expect = 0.78 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Frame = +1 Query: 181 SHNMEYDCAVCLQKCQHPTKLS-CGH-VFCFLCV 276 S + DC +CLQK +LS CGH F + C+ Sbjct: 14 SRYLRRDCVICLQKDGLRAQLSPCGHDQFDYSCI 47 >SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizosaccharomyces pombe|chr 2|||Manual Length = 872 Score = 27.1 bits (57), Expect = 0.78 Identities = 9/21 (42%), Positives = 14/21 (66%) Frame = -2 Query: 310 YLKKITKYFKPSHKENRKHDR 248 + K +KY+ PSHK++ K R Sbjct: 627 HAKSFSKYYSPSHKDSNKTSR 647 >SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr 1|||Manual Length = 235 Score = 26.2 bits (55), Expect = 1.4 Identities = 6/23 (26%), Positives = 17/23 (73%) Frame = -2 Query: 256 HDRRIVLLDVDIFASKQHNHIPY 188 H+ +++ D+D+F+ +H+ +P+ Sbjct: 110 HEEMVIVRDIDVFSLCEHHLVPF 132 >SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 338 Score = 25.8 bits (54), Expect = 1.8 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = -1 Query: 338 FFFYRAIFRLFKKNN 294 F FY I RLF KNN Sbjct: 319 FVFYEGIIRLFNKNN 333 >SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 251 Score = 25.8 bits (54), Expect = 1.8 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 6/31 (19%) Frame = +1 Query: 202 CAVCLQKCQH------PTKLSCGHVFCFLCV 276 C +C+Q+ P CGH +C+ C+ Sbjct: 192 CMMCVQRGDERVAITTPYTTDCGHTYCYACI 222 >SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosaccharomyces pombe|chr 3|||Manual Length = 680 Score = 25.4 bits (53), Expect = 2.4 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%) Frame = +1 Query: 202 CAVC-LQKCQHPTKLSCGHVFCFLCVK 279 C+VC ++ + CGH FC+ C++ Sbjct: 627 CSVCNFERWKDRIISLCGHGFCYQCIQ 653 >SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pombe|chr 1|||Manual Length = 1375 Score = 25.4 bits (53), Expect = 2.4 Identities = 7/26 (26%), Positives = 14/26 (53%) Frame = +1 Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCVK 279 C +C + +CGH++C C++ Sbjct: 1092 CIICRDIIKQGFITTCGHLYCSFCLE 1117 >SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 504 Score = 25.0 bits (52), Expect = 3.2 Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 3/28 (10%) Frame = +1 Query: 202 CAVCLQK---CQHPTKLSCGHVFCFLCV 276 C+ ++K C H T C + FC++C+ Sbjct: 294 CSTTIEKNGGCNHMTCKKCKYEFCWVCL 321 >SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 254 Score = 25.0 bits (52), Expect = 3.2 Identities = 8/12 (66%), Positives = 9/12 (75%) Frame = +1 Query: 247 CGHVFCFLCVKV 282 CGHV+C C KV Sbjct: 212 CGHVYCGSCAKV 223 >SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe|chr 3|||Manual Length = 973 Score = 25.0 bits (52), Expect = 3.2 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = -2 Query: 310 YLKKITKYFKPSHKENRKHDRRIVLLDVDIFASKQHNHIPYYVRKLIQ 167 Y K IT KEN + VLLD FA+ + HI + + K+++ Sbjct: 58 YFKSITSDLYEWQKENLNKEDSFVLLDGPPFANGR-LHIGHALNKILK 104 >SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces pombe|chr 3|||Manual Length = 332 Score = 24.6 bits (51), Expect = 4.2 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = -2 Query: 304 KKITKYFKPSHKENRKHDRRIVLL 233 +K+ ++F HK+ KH R+V L Sbjct: 111 RKLFRWFNDLHKQAEKHGGRVVRL 134 >SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1133 Score = 24.2 bits (50), Expect = 5.5 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = +1 Query: 199 DCAVCLQK-CQHPTKLSCGHVFCFLCV 276 +C +C + Q+P L+C H C C+ Sbjct: 876 ECPICCNEPIQNPLLLNCKHACCGDCL 902 >SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 205 Score = 24.2 bits (50), Expect = 5.5 Identities = 7/11 (63%), Positives = 8/11 (72%) Frame = +1 Query: 247 CGHVFCFLCVK 279 CGH+FC C K Sbjct: 167 CGHLFCSTCAK 177 >SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 435 Score = 23.8 bits (49), Expect = 7.3 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Frame = +1 Query: 160 KHAVLIFSHNMEYDCAVCLQK-----CQHPTKLSCGHVFCFLCVK 279 K+A L+ ++ C VC + C T+ CGHV C C++ Sbjct: 160 KNAKLLEFQIRKFQCNVCFDEFNGTDCFQLTR--CGHVSCQSCLR 202 >SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 677 Score = 23.8 bits (49), Expect = 7.3 Identities = 7/16 (43%), Positives = 11/16 (68%) Frame = +1 Query: 232 PTKLSCGHVFCFLCVK 279 P +L CGH+ F C++ Sbjct: 323 PKRLPCGHILHFHCLR 338 >SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 180 Score = 23.8 bits (49), Expect = 7.3 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -2 Query: 337 FFFTGLYFVYLKKITKYFKPSHKENRKHDRRIVLLDVDIF 218 F+F+GLY + ++Y + +K R + R+V+ V F Sbjct: 82 FYFSGLYRTTIVYPSRYVQQVNKAMRFFNIRLVITPVPWF 121 >SPCC18.03 |||shuttle craft like transcriptional regulator|Schizosaccharomyces pombe|chr 3|||Manual Length = 1077 Score = 23.4 bits (48), Expect = 9.6 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = +1 Query: 208 VCLQKCQHPTKLSCGHVFC 264 +C + C KLSCG+ FC Sbjct: 584 ICFRPCNK--KLSCGNHFC 600 >SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pombe|chr 2|||Manual Length = 741 Score = 23.4 bits (48), Expect = 9.6 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 5/35 (14%) Frame = +1 Query: 190 MEYDCAVCLQKC-----QHPTKLSCGHVFCFLCVK 279 M+ C +C + TK+ CGH+F C++ Sbjct: 103 MDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQ 137 >SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 438 Score = 23.4 bits (48), Expect = 9.6 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Frame = -1 Query: 131 LPISKLLKY-VCSFVVFHNFLT 69 L + KL+K +C F++FH+F T Sbjct: 24 LHVWKLIKLLICKFLLFHDFGT 45 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,453,351 Number of Sequences: 5004 Number of extensions: 28950 Number of successful extensions: 83 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 83 length of database: 2,362,478 effective HSP length: 64 effective length of database: 2,042,222 effective search space used: 98026656 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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