Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h12f
(338 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 37 7e-04
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 35 0.003
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 35 0.004
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 34 0.007
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 33 0.009
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 30 0.084
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 30 0.084
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 30 0.11
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 30 0.11
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 29 0.26
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 28 0.34
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 0.78
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 27 0.78
SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr... 26 1.4
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 26 1.8
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 1.8
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 2.4
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 25 2.4
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 25 3.2
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 3.2
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 3.2
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 4.2
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 24 5.5
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 24 5.5
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 24 7.3
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 24 7.3
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual 24 7.3
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 23 9.6
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 23 9.6
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 23 9.6
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 37.1 bits (82), Expect = 7e-04
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 276
+++CA+C P +L C HVFC C+
Sbjct: 357 DFECAICSNVAYKPVRLGCSHVFCLHCL 384
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 35.1 bits (77), Expect = 0.003
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCVKV 282
C +C +K ++P LS G VFC+ C++V
Sbjct: 257 CKICGEKIKNPAVLSTGFVFCYPCIQV 283
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 34.7 bits (76), Expect = 0.004
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 276
+Y C +CL ++ + CGH+FC C+
Sbjct: 203 DYKCVICLDSPENLSCTPCGHIFCNFCI 230
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 33.9 bits (74), Expect = 0.007
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCV 276
C++C++ P CGH+FC+ C+
Sbjct: 256 CSLCMEFIHCPAATECGHIFCWSCI 280
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 33.5 bits (73), Expect = 0.009
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 199 DCAVCLQKCQHPTKLSCGHVFCFLCV 276
+C +C + Q P CGH +C+ C+
Sbjct: 84 ECPICTEALQRPFTTHCGHTYCYECL 109
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 30.3 bits (65), Expect = 0.084
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLS-CGHVFCFLCV 276
C CL++ ++S CGHV+CF C+
Sbjct: 214 CPFCLEEKPVAARMSRCGHVYCFSCL 239
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.084
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPT-KLSCGHVFCFLCVKV 282
+++C+VCL C P + CGH C C+ +
Sbjct: 603 DFNCSVCLDPCLAPVFIIPCGHFTCQECMSM 633
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 29.9 bits (64), Expect = 0.11
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCVK 279
C +C + + P SC H FC C++
Sbjct: 29 CLICHEYFRAPLITSCSHTFCSFCIR 54
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 29.9 bits (64), Expect = 0.11
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 276
E +C +C P CGH FC C+
Sbjct: 166 ELECQICFGMLYDPVVSPCGHTFCGPCL 193
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 28.7 bits (61), Expect = 0.26
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 187 NMEYDCAVCLQKCQHPTKLSCGHVFCFLC 273
++ + C +C + + P +CGH FC C
Sbjct: 249 DIPFVCLICKKDYRSPIATTCGHHFCEQC 277
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 28.3 bits (60), Expect = 0.34
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCV 276
C +C + Q + C H FC LCV
Sbjct: 711 CKICDEVAQDAIESRCHHTFCRLCV 735
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 27.1 bits (57), Expect = 0.78
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 181 SHNMEYDCAVCLQKCQHPTKLS-CGH-VFCFLCV 276
S + DC +CLQK +LS CGH F + C+
Sbjct: 14 SRYLRRDCVICLQKDGLRAQLSPCGHDQFDYSCI 47
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 0.78
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 310 YLKKITKYFKPSHKENRKHDR 248
+ K +KY+ PSHK++ K R
Sbjct: 627 HAKSFSKYYSPSHKDSNKTSR 647
>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 26.2 bits (55), Expect = 1.4
Identities = 6/23 (26%), Positives = 17/23 (73%)
Frame = -2
Query: 256 HDRRIVLLDVDIFASKQHNHIPY 188
H+ +++ D+D+F+ +H+ +P+
Sbjct: 110 HEEMVIVRDIDVFSLCEHHLVPF 132
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 1.8
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 338 FFFYRAIFRLFKKNN 294
F FY I RLF KNN
Sbjct: 319 FVFYEGIIRLFNKNN 333
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 1.8
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 6/31 (19%)
Frame = +1
Query: 202 CAVCLQKCQH------PTKLSCGHVFCFLCV 276
C +C+Q+ P CGH +C+ C+
Sbjct: 192 CMMCVQRGDERVAITTPYTTDCGHTYCYACI 222
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 2.4
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 202 CAVC-LQKCQHPTKLSCGHVFCFLCVK 279
C+VC ++ + CGH FC+ C++
Sbjct: 627 CSVCNFERWKDRIISLCGHGFCYQCIQ 653
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.4 bits (53), Expect = 2.4
Identities = 7/26 (26%), Positives = 14/26 (53%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCVK 279
C +C + +CGH++C C++
Sbjct: 1092 CIICRDIIKQGFITTCGHLYCSFCLE 1117
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.0 bits (52), Expect = 3.2
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Frame = +1
Query: 202 CAVCLQK---CQHPTKLSCGHVFCFLCV 276
C+ ++K C H T C + FC++C+
Sbjct: 294 CSTTIEKNGGCNHMTCKKCKYEFCWVCL 321
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 3.2
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +1
Query: 247 CGHVFCFLCVKV 282
CGHV+C C KV
Sbjct: 212 CGHVYCGSCAKV 223
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 3.2
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 310 YLKKITKYFKPSHKENRKHDRRIVLLDVDIFASKQHNHIPYYVRKLIQ 167
Y K IT KEN + VLLD FA+ + HI + + K+++
Sbjct: 58 YFKSITSDLYEWQKENLNKEDSFVLLDGPPFANGR-LHIGHALNKILK 104
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 4.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 304 KKITKYFKPSHKENRKHDRRIVLL 233
+K+ ++F HK+ KH R+V L
Sbjct: 111 RKLFRWFNDLHKQAEKHGGRVVRL 134
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 24.2 bits (50), Expect = 5.5
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 199 DCAVCLQK-CQHPTKLSCGHVFCFLCV 276
+C +C + Q+P L+C H C C+
Sbjct: 876 ECPICCNEPIQNPLLLNCKHACCGDCL 902
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 24.2 bits (50), Expect = 5.5
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +1
Query: 247 CGHVFCFLCVK 279
CGH+FC C K
Sbjct: 167 CGHLFCSTCAK 177
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 23.8 bits (49), Expect = 7.3
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +1
Query: 160 KHAVLIFSHNMEYDCAVCLQK-----CQHPTKLSCGHVFCFLCVK 279
K+A L+ ++ C VC + C T+ CGHV C C++
Sbjct: 160 KNAKLLEFQIRKFQCNVCFDEFNGTDCFQLTR--CGHVSCQSCLR 202
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 23.8 bits (49), Expect = 7.3
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +1
Query: 232 PTKLSCGHVFCFLCVK 279
P +L CGH+ F C++
Sbjct: 323 PKRLPCGHILHFHCLR 338
>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 23.8 bits (49), Expect = 7.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 337 FFFTGLYFVYLKKITKYFKPSHKENRKHDRRIVLLDVDIF 218
F+F+GLY + ++Y + +K R + R+V+ V F
Sbjct: 82 FYFSGLYRTTIVYPSRYVQQVNKAMRFFNIRLVITPVPWF 121
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 208 VCLQKCQHPTKLSCGHVFC 264
+C + C KLSCG+ FC
Sbjct: 584 ICFRPCNK--KLSCGNHFC 600
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Frame = +1
Query: 190 MEYDCAVCLQKC-----QHPTKLSCGHVFCFLCVK 279
M+ C +C + TK+ CGH+F C++
Sbjct: 103 MDLTCPICYDDMNENDEKQATKMPCGHIFGKNCLQ 137
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 131 LPISKLLKY-VCSFVVFHNFLT 69
L + KL+K +C F++FH+F T
Sbjct: 24 LHVWKLIKLLICKFLLFHDFGT 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,351
Number of Sequences: 5004
Number of extensions: 28950
Number of successful extensions: 83
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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