Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h12f
(338 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membr... 42 1e-04
At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing... 40 4e-04
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 40 6e-04
At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger) fa... 39 7e-04
At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger) fa... 39 7e-04
At2g44410.1 68415.m05523 expressed protein 39 7e-04
At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing... 39 0.001
At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger) fa... 38 0.001
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq... 38 0.002
At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger) fa... 37 0.004
At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger) fa... 37 0.004
At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger) fa... 37 0.004
At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger) fa... 37 0.004
At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger) fa... 37 0.004
At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger) fa... 36 0.007
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa... 36 0.009
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 36 0.009
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 36 0.009
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 36 0.009
At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger) fa... 35 0.012
At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger) fa... 35 0.012
At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger) fa... 35 0.012
At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger) fa... 35 0.016
At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger) fa... 35 0.016
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) fa... 34 0.021
At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger) fa... 34 0.021
At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger) fa... 34 0.021
At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger) fa... 34 0.028
At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger) fa... 34 0.028
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 33 0.037
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 33 0.037
At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger) fa... 33 0.049
At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger) fa... 33 0.064
At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger) fa... 33 0.064
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 33 0.064
At4g34370.1 68417.m04883 IBR domain-containing protein similar t... 32 0.085
At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger) fa... 32 0.085
At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger) fa... 32 0.085
At4g12140.1 68417.m01928 zinc finger (C3HC4-type RING finger) fa... 32 0.085
At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing... 31 0.15
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 31 0.15
At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger) fa... 31 0.20
At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger) fa... 31 0.20
At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger) fa... 31 0.20
At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger) fa... 31 0.20
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 31 0.26
At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger) fa... 31 0.26
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 31 0.26
At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger) fa... 30 0.34
At2g01150.1 68415.m00024 zinc finger (C3HC4-type RING finger) fa... 30 0.45
At1g05890.1 68414.m00617 zinc finger protein-related contains lo... 30 0.45
At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger) fa... 29 0.60
At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger) fa... 29 0.60
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa... 29 0.60
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa... 29 0.60
At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) fa... 29 0.60
At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger) fa... 29 0.79
At1g24440.1 68414.m03079 expressed protein similar to MTD2 [Medi... 29 0.79
At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger) fa... 29 0.79
At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1 GI... 29 1.0
At3g48030.1 68416.m05236 hypoxia-responsive family protein / zin... 29 1.0
At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger) fa... 29 1.0
At2g31760.1 68415.m03878 zinc finger protein-related contains lo... 29 1.0
At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger) fa... 28 1.4
At2g46660.1 68415.m05822 cytochrome P450, putative similar to cy... 28 1.4
At2g31510.1 68415.m03850 IBR domain-containing protein / ARIADNE... 28 1.4
At1g65430.1 68414.m07423 zinc finger protein-related contains we... 28 1.4
At5g01450.1 68418.m00058 expressed protein 28 1.8
At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger) fa... 28 1.8
At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger) fa... 27 2.4
At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger) fa... 27 2.4
At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger) fa... 27 2.4
At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger) fa... 27 2.4
At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger) fa... 27 2.4
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 27 2.4
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 27 3.2
At4g29070.1 68417.m04159 expressed protein 27 3.2
At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger) fa... 27 3.2
At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger) fa... 27 3.2
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ... 27 3.2
At1g54820.1 68414.m06249 protein kinase family protein contains ... 27 3.2
At1g15100.1 68414.m01803 zinc finger (C3HC4-type RING finger) fa... 27 3.2
At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger) fa... 27 4.2
At5g53910.1 68418.m06708 (S)-2-hydroxy-acid oxidase, peroxisomal... 27 4.2
At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger) fa... 27 4.2
At4g12150.1 68417.m01930 zinc finger (C3HC4-type RING finger) fa... 27 4.2
At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger) fa... 27 4.2
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa... 27 4.2
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ... 27 4.2
At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger) fa... 27 4.2
At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger) fa... 27 4.2
At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger) fa... 27 4.2
At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger) fa... 27 4.2
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 27 4.2
At5g49110.1 68418.m06079 expressed protein ; expression support... 26 5.6
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 26 5.6
At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger) fa... 26 5.6
At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger) fa... 26 5.6
At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger) fa... 26 5.6
At3g20680.1 68416.m02617 expressed protein 26 5.6
At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger) fa... 26 5.6
At1g61620.1 68414.m06943 expressed protein contains Pfam profile... 26 5.6
At5g57300.1 68418.m07158 UbiE/COQ5 methyltransferase family prot... 26 7.4
At5g09760.1 68418.m01130 pectinesterase family protein contains ... 26 7.4
At5g03070.1 68418.m00255 armadillo/beta-catenin repeat family pr... 26 7.4
At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger) fa... 26 7.4
At3g54300.1 68416.m06001 synaptobrevin family protein similar to... 26 7.4
At3g50010.1 68416.m05468 DC1 domain-containing protein contains ... 26 7.4
At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finger) fa... 26 7.4
At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger) fa... 26 7.4
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 26 7.4
At5g57820.1 68418.m07231 hypothetical protein 25 9.7
At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger) fa... 25 9.7
At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger) fa... 25 9.7
At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger) fa... 25 9.7
At4g00070.1 68417.m00007 zinc finger protein-related contains si... 25 9.7
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica... 25 9.7
At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger) fa... 25 9.7
At3g05680.1 68416.m00634 expressed protein 25 9.7
At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger) fa... 25 9.7
At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger) fa... 25 9.7
>At2g26350.1 68415.m03163 zinc-binding peroxisomal integral membrane
protein (PEX10) identical to zinc-binding peroxisomal
integral membrane protein GI:4337011 from [Arabidopsis
thaliana]
Length = 381
Score = 41.9 bits (94), Expect = 1e-04
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCV 276
C +CL QHPT CGHVFC+ C+
Sbjct: 327 CTLCLSTRQHPTATPCGHVFCWSCI 351
>At2g38920.1 68415.m04784 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427; contains Pfam
profile PF03105: SPX domain, weak hit to PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 335
Score = 39.9 bits (89), Expect = 4e-04
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +1
Query: 181 SHNMEYD--CAVCLQKCQHPTKLSCGHVFCFLCV-KV*NILLF 300
S +EYD CA+CL+ +P L CGH+FC C ++L+F
Sbjct: 222 SIELEYDLTCAICLETVFNPYALKCGHIFCNSCACSAASVLIF 264
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 39.5 bits (88), Expect = 6e-04
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 279
E CA+CL+ C P+ +CGH FC C++
Sbjct: 721 ELSCAICLEICFEPSTTTCGHSFCKKCLR 749
>At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 39.1 bits (87), Expect = 7e-04
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 196 YDCAVCLQKCQHPTKLSCGHVFCFLCV 276
+DC +CL Q P CGH+FC+ C+
Sbjct: 46 FDCNICLDSVQEPVVTLCGHLFCWPCI 72
>At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger)
family protein (RMA1) identical to RING zinc finger
protein RMA1 gi:3164222
Length = 249
Score = 39.1 bits (87), Expect = 7e-04
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 196 YDCAVCLQKCQHPTKLSCGHVFCFLCV 276
+DC +CL Q P CGH+FC+ C+
Sbjct: 46 FDCNICLDSVQEPVVTLCGHLFCWPCI 72
>At2g44410.1 68415.m05523 expressed protein
Length = 413
Score = 39.1 bits (87), Expect = 7e-04
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 196 YDCAVCLQKCQHPTKLSCGHVFCFLC 273
+DC +CL+K + P CGH+FC+ C
Sbjct: 123 FDCNICLEKAEDPILTCCGHLFCWGC 148
>At1g02860.1 68414.m00251 SPX (SYG1/Pho81/XPR1) domain-containing
protein / zinc finger (C3HC4-type RING finger)
protein-related weak similarity to tripartite motif
protein TRIM13 [Mus musculus] GI:12407427, gpStaf50
[Homo sapiens] GI:899300; contains Pfam profiles
PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 335
Score = 38.7 bits (86), Expect = 0.001
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 151 CVLKHAVLIFSHNMEYDCAVCLQKCQHPTKLSCGHVFCFLC 273
C L +V + +++ C++CL P L+CGH++C++C
Sbjct: 217 CELSDSVKV---DIDLTCSICLDTVFDPISLTCGHIYCYMC 254
>At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 193
Score = 38.3 bits (85), Expect = 0.001
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 276
++DC +CL + + P CGH+FC+ C+
Sbjct: 18 DFDCNICLDQVRDPVVTLCGHLFCWPCI 45
>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
ubiquitin ligase, contains two RING finger domain;
identical to PRT1 [Arabidopsis thaliana] GI:3319884
Length = 410
Score = 37.9 bits (84), Expect = 0.002
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 276
++ C VCL+ P LSCGH+ CF CV
Sbjct: 23 QFLCCVCLELLYKPIVLSCGHLSCFWCV 50
Score = 31.9 bits (69), Expect = 0.11
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCV 276
C+ C + P L+CGHV+C CV
Sbjct: 192 CSACKELLVRPVVLNCGHVYCEGCV 216
>At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 243
Score = 36.7 bits (81), Expect = 0.004
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 196 YDCAVCLQKCQHPTKLSCGHVFCFLCV 276
+DC +CL P CGH+FC+ C+
Sbjct: 42 FDCNICLDTAHDPVVTLCGHLFCWPCI 68
>At1g18660.4 68414.m02326 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 491
Score = 36.7 bits (81), Expect = 0.004
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 276
++DC VCL+ P CGH FC C+
Sbjct: 193 DFDCTVCLKLLYEPATTPCGHTFCRSCL 220
>At1g18660.3 68414.m02329 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 36.7 bits (81), Expect = 0.004
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 276
++DC VCL+ P CGH FC C+
Sbjct: 193 DFDCTVCLKLLYEPATTPCGHTFCRSCL 220
>At1g18660.2 68414.m02328 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 36.7 bits (81), Expect = 0.004
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 276
++DC VCL+ P CGH FC C+
Sbjct: 193 DFDCTVCLKLLYEPATTPCGHTFCRSCL 220
>At1g18660.1 68414.m02327 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 486
Score = 36.7 bits (81), Expect = 0.004
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 276
++DC VCL+ P CGH FC C+
Sbjct: 193 DFDCTVCLKLLYEPATTPCGHTFCRSCL 220
>At2g42030.1 68415.m05198 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 425
Score = 35.9 bits (79), Expect = 0.007
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 196 YDCAVCLQKCQHPTKLSCGHVFCFLCV 276
+DC +CL + P +CGH++C+ C+
Sbjct: 139 FDCYICLDLSKDPVVTNCGHLYCWSCL 165
>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 772
Score = 35.5 bits (78), Expect = 0.009
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCV 276
C +CL+ P SCGH+FCF C+
Sbjct: 245 CPICLEYPLCPQITSCGHIFCFPCI 269
>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P31244 DNA
repair protein RAD16 {Saccharomyces cerevisiae};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 638
Score = 35.5 bits (78), Expect = 0.009
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCVKV 282
C+VC + P CGHVFC+ CV V
Sbjct: 395 CSVCSDPPKDPVVTLCGHVFCYECVSV 421
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 35.5 bits (78), Expect = 0.009
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 276
+++C +C + Q P CGH+FC+ C+
Sbjct: 25 DFECNICFELAQDPIVTLCGHLFCWPCL 52
>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 35.5 bits (78), Expect = 0.009
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 196 YDCAVCLQKCQHPTKLSCGHVFCFLCV 276
++C +CL Q P CGH+FC+ C+
Sbjct: 21 FECNICLDLAQDPIVTLCGHLFCWPCL 47
>At3g58030.3 68416.m06469 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 35.1 bits (77), Expect = 0.012
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 196 YDCAVCLQKCQHPTKLSCGHVFCFLCV 276
+DC +CL + P CGH++C+ C+
Sbjct: 137 FDCNICLDLSKEPVLTCCGHLYCWPCL 163
>At3g58030.2 68416.m06468 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 35.1 bits (77), Expect = 0.012
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 196 YDCAVCLQKCQHPTKLSCGHVFCFLCV 276
+DC +CL + P CGH++C+ C+
Sbjct: 137 FDCNICLDLSKEPVLTCCGHLYCWPCL 163
>At3g58030.1 68416.m06467 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 436
Score = 35.1 bits (77), Expect = 0.012
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 196 YDCAVCLQKCQHPTKLSCGHVFCFLCV 276
+DC +CL + P CGH++C+ C+
Sbjct: 137 FDCNICLDLSKEPVLTCCGHLYCWPCL 163
>At1g04020.2 68414.m00389 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 713
Score = 34.7 bits (76), Expect = 0.016
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 190 MEYDCAVCLQKCQHPTKLSCGHVFCFLCV 276
+E C +CL+ P L C HVFC CV
Sbjct: 21 LELKCPLCLKLLNRPVLLPCDHVFCDSCV 49
>At1g04020.1 68414.m00388 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 714
Score = 34.7 bits (76), Expect = 0.016
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 190 MEYDCAVCLQKCQHPTKLSCGHVFCFLCV 276
+E C +CL+ P L C HVFC CV
Sbjct: 21 LELKCPLCLKLLNRPVLLPCDHVFCDSCV 49
>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 360
Score = 34.3 bits (75), Expect = 0.021
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 279
E C VC+ K + + CGH FC LC K
Sbjct: 309 ELSCCVCMVKIKGASFTPCGHTFCKLCSK 337
>At1g66050.1 68414.m07497 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 623
Score = 34.3 bits (75), Expect = 0.021
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 190 MEYDCAVCLQKCQHPTKLSCGHVFCFLC 273
+E C++C+Q + P CGH FC C
Sbjct: 125 LEIFCSICIQLPERPVTTPCGHNFCLKC 152
Score = 28.7 bits (61), Expect = 1.0
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 279
E+ C +C + P C H FC C++
Sbjct: 495 EFSCQICRKVLSLPVTTPCAHNFCKACLE 523
>At1g66040.1 68414.m07495 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 622
Score = 34.3 bits (75), Expect = 0.021
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 190 MEYDCAVCLQKCQHPTKLSCGHVFCFLC 273
+E C++C+Q + P CGH FC C
Sbjct: 125 LEIFCSICIQLPERPVTTPCGHNFCLKC 152
Score = 28.7 bits (61), Expect = 1.0
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 279
E+ C +C + P C H FC C++
Sbjct: 495 EFSCQICRKVLSLPVTTPCAHNFCKACLE 523
>At5g39550.1 68418.m04791 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 617
Score = 33.9 bits (74), Expect = 0.028
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 190 MEYDCAVCLQKCQHPTKLSCGHVFCFLC 273
+E C++C+Q + P CGH FC C
Sbjct: 125 LEIFCSICIQLPERPITTPCGHNFCLKC 152
Score = 29.1 bits (62), Expect = 0.79
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 279
E+ C +C + P C H FC C++
Sbjct: 492 EFSCQICREVLSLPVTTPCAHNFCKACLE 520
>At1g74990.1 68414.m08705 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 137
Score = 33.9 bits (74), Expect = 0.028
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 196 YDCAVCLQKCQHPTKLSCGHVFCFLCV 276
+ C +CL+ + P CGH+FC+ C+
Sbjct: 17 FGCNICLELAREPIVTLCGHLFCWPCL 43
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 33.5 bits (73), Expect = 0.037
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCV 276
E C +CL LSC HVFC C+
Sbjct: 348 ELKCPICLSLYNSAVSLSCNHVFCNACI 375
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 33.5 bits (73), Expect = 0.037
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCV 276
C VC + P CGH+FC+ CV
Sbjct: 679 CCVCHDPPEDPVVTLCGHIFCYQCV 703
>At3g07200.1 68416.m00859 zinc finger (C3HC4-type RING finger)
family protein contains Pfam PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 182
Score = 33.1 bits (72), Expect = 0.049
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 279
++ C +CL CGH+FC C+K
Sbjct: 124 KFSCPICLCPFTQEVSTKCGHIFCKKCIK 152
>At5g01960.1 68418.m00115 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 426
Score = 32.7 bits (71), Expect = 0.064
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCV 276
CA+C +K P L C H+FC CV
Sbjct: 365 CAICQEKMHTPILLRCKHMFCEDCV 389
>At3g25030.1 68416.m03128 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 250
Score = 32.7 bits (71), Expect = 0.064
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLC 273
E C VC+ + + + CGH FC LC
Sbjct: 199 EISCCVCMVRSKGAAFIPCGHTFCRLC 225
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 32.7 bits (71), Expect = 0.064
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCV 276
C +C+Q + +CGH FC++C+
Sbjct: 52 CPICMQIIKDAFLTACGHSFCYMCI 76
>At4g34370.1 68417.m04883 IBR domain-containing protein similar to
SP|Q94981 Ariadne-1 protein (Ari-1) {Drosophila
melanogaster}; contains Pfam profile PF01485: IBR domain
Length = 597
Score = 32.3 bits (70), Expect = 0.085
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 178 FSHNMEYDCAVCLQKC--QHPTKLSCGHVFCFLC 273
F + + C VC++ H T++ CGH FC C
Sbjct: 115 FPQSSQMSCDVCMEDLPGDHMTRMDCGHCFCNNC 148
>At4g13100.2 68417.m02042 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 265
Score = 32.3 bits (70), Expect = 0.085
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLC 273
E C VC+ + + + CGH FC LC
Sbjct: 214 ELGCCVCMVRSKGAAFIPCGHTFCRLC 240
>At4g13100.1 68417.m02041 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 304
Score = 32.3 bits (70), Expect = 0.085
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLC 273
E C VC+ + + + CGH FC LC
Sbjct: 253 ELGCCVCMVRSKGAAFIPCGHTFCRLC 279
>At4g12140.1 68417.m01928 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger proteins
RHG1a [Arabidopsis thaliana] GI:3822225, RHY1a
[Arabidopsis thaliana] GI:3790593; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 202
Score = 32.3 bits (70), Expect = 0.085
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Frame = +1
Query: 181 SHNMEYD-CAVCLQKCQH-----PTKLSCGHVFCFLCV 276
S NME D C++CLQ PT++SC HVF C+
Sbjct: 145 SFNMETDSCSICLQSLVSSSKTGPTRMSCSHVFHSSCL 182
>At3g04460.1 68416.m00473 Pex2/Pex12 N-terminal domain-containing
protein similar to SP|O00623 Peroxisome assembly protein
12 (Peroxin-12) (Peroxisome assembly factor-3) (PAF-3)
{Homo sapiens}; contains Pfam profile PF04757: Pex2 /
Pex12 amino terminal region
Length = 393
Score = 31.5 bits (68), Expect = 0.15
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLS-CGHVFCFLCV 276
CA+CLQK +P+ ++ G VFC+ CV
Sbjct: 339 CALCLQKRANPSVVTVSGFVFCYSCV 364
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 31.5 bits (68), Expect = 0.15
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 163 HAVLIFSHNMEYDCAVCLQKCQHPTKLSCGHVFCFLCV 276
+A L+ + E +C +C + SC HVFC C+
Sbjct: 566 NANLVDENKSEQECGLCHDPAEDYVVTSCAHVFCKACL 603
>At5g48655.3 68418.m06019 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 31.1 bits (67), Expect = 0.20
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKV 282
++ C +C+ CGH+FC C+K+
Sbjct: 145 KFTCPICMCPFTEEMSTKCGHIFCKGCIKM 174
>At5g48655.2 68418.m06018 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 31.1 bits (67), Expect = 0.20
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKV 282
++ C +C+ CGH+FC C+K+
Sbjct: 145 KFTCPICMCPFTEEMSTKCGHIFCKGCIKM 174
>At5g48655.1 68418.m06017 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 203
Score = 31.1 bits (67), Expect = 0.20
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKV 282
++ C +C+ CGH+FC C+K+
Sbjct: 145 KFTCPICMCPFTEEMSTKCGHIFCKGCIKM 174
>At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger C3HC4 type (RING finger), PF02182: YDG/SRA
domain
Length = 465
Score = 31.1 bits (67), Expect = 0.20
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLC 273
+ +C++C Q P + CGH FC C
Sbjct: 106 DLNCSLCNQLPDRPVTILCGHNFCLKC 132
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 30.7 bits (66), Expect = 0.26
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = +1
Query: 154 VLKHAVLIFSHNMEYDCAVCLQKCQHPTKLSCGHVFCFLCV 276
+L+ V ++DC +C+ + C H+FC C+
Sbjct: 600 LLQKLVAALQDGEDFDCPICISPPTNIIITRCAHIFCRACI 640
>At4g30400.1 68417.m04318 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 472
Score = 30.7 bits (66), Expect = 0.26
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = +1
Query: 142 DNLCVLKHAVLIFSHNMEYDCAVCLQKCQHPTKL----SCGHVFCFLCV 276
D L V + +I N +DCAVCL + + KL C H F C+
Sbjct: 114 DTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCI 162
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 30.7 bits (66), Expect = 0.26
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCV 276
C C + + P CGH+FC+ CV
Sbjct: 751 CYECNEPPEKPVVTLCGHIFCYECV 775
>At5g67120.1 68418.m08462 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 272
Score = 30.3 bits (65), Expect = 0.34
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +1
Query: 202 CAVCLQKC---QHPTKLSCGHVFCFLCVK 279
C +C QK + +KL CGH F F C+K
Sbjct: 227 CVICQQKLKDNEEVSKLGCGHDFHFGCIK 255
>At2g01150.1 68415.m00024 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 147
Score = 29.9 bits (64), Expect = 0.45
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +1
Query: 178 FSHNMEYDCAVCLQKC---QHPTKLSCGHVFCFLCVK 279
+S N DC VCL K + KL C HVF C++
Sbjct: 66 YSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLE 102
>At1g05890.1 68414.m00617 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 552
Score = 29.9 bits (64), Expect = 0.45
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 154 VLKHAVLIFSHNMEYDCAVCLQK--CQHPTKLSCGHVFCFLC 273
+L+ V+ E+ C +C + +SCGH FC C
Sbjct: 116 ILEGPVVTTPDGREFTCGICFDSYTLEEIVSVSCGHPFCATC 157
>At2g04240.2 68415.m00413 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 29.5 bits (63), Expect = 0.60
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +1
Query: 199 DCAVCLQKCQHPT---KLSCGHVFCFLCVK 279
+C+VCL K Q + KL CGH+F C++
Sbjct: 102 ECSVCLSKFQGDSEINKLKCGHLFHKTCLE 131
>At2g04240.1 68415.m00412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 162
Score = 29.5 bits (63), Expect = 0.60
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = +1
Query: 199 DCAVCLQKCQHPT---KLSCGHVFCFLCVK 279
+C+VCL K Q + KL CGH+F C++
Sbjct: 102 ECSVCLSKFQGDSEINKLKCGHLFHKTCLE 131
>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 642
Score = 29.5 bits (63), Expect = 0.60
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 279
E+ C +C Q P C H FC C++
Sbjct: 512 EFKCQICQQVLTLPVTTPCAHNFCKACLE 540
Score = 27.9 bits (59), Expect = 1.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLC 273
C+ C+Q + P CGH C C
Sbjct: 146 CSFCMQLPERPVTKPCGHNACLKC 169
>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
family protein low similarity to nuclear protein np95
[Mus musculus] GI:4220590; contains Pfam profiles
PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
type (RING finger), PF00628: PHD-finger
Length = 645
Score = 29.5 bits (63), Expect = 0.60
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 279
E+ C +C Q P C H FC C++
Sbjct: 515 EFKCQICQQVLTLPVTTPCAHNFCKACLE 543
Score = 27.9 bits (59), Expect = 1.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLC 273
C+ C+Q + P CGH C C
Sbjct: 146 CSFCMQLPERPVTKPCGHNACLKC 169
>At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 660
Score = 29.5 bits (63), Expect = 0.60
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 279
E+ C +C + +P C H FC C++
Sbjct: 525 EFKCQICQKVMTNPVTTPCAHNFCKACLE 553
>At4g22250.1 68417.m03219 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 214
Score = 29.1 bits (62), Expect = 0.79
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLC 273
C VC+ + + + CGH FC +C
Sbjct: 166 CCVCMGRKKGAAFIPCGHTFCRVC 189
>At1g24440.1 68414.m03079 expressed protein similar to MTD2
[Medicago truncatula] GI:9294812
Length = 251
Score = 29.1 bits (62), Expect = 0.79
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCVK 279
E +C +CL+ C +C H C C +
Sbjct: 152 EDECGICLEPCTKMVLPNCCHAMCIKCYR 180
>At1g13195.1 68414.m01530 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 260
Score = 29.1 bits (62), Expect = 0.79
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTKLSCGHVFCFLCVKV*NI 291
E +C +CL+ C +C H C C + N+
Sbjct: 159 EEECGICLETCTKMVLPNCCHSMCIKCYRNWNL 191
>At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1
GI:5566292 from [Drosophila melanogaster]; contains
prosite evidence: PS00383: Tyrosine specific protein
phosphatases active site
Length = 632
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 334 FFTGLYFVYLKKITKYFKPSHKENRK 257
FF GLY +++++ K+F+ HK+ K
Sbjct: 224 FFEGLYRNHMEEVIKFFETHHKDKYK 249
>At3g48030.1 68416.m05236 hypoxia-responsive family protein / zinc
finger (C3HC4-type RING finger) family protein similar
to RING-H2 finger protein RHX1a [Arabidopsis thaliana]
GI:3790591; contains Pfam profiles PF00097: Zinc finger
C3HC4 type (RING finger), PF04588: Hypoxia induced
protein conserved region
Length = 349
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = +1
Query: 142 DNLCVLKHAVLIFSHNMEYDCAVCLQKCQHPTKLS----CGHVFCFLCV 276
D L V + + S +DCAVCL + KL C H F C+
Sbjct: 187 DALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCI 235
>At2g31770.1 68415.m03879 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain,
PF01485: IBR domain
Length = 543
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +1
Query: 223 CQHPT-KLSCGHVFCFLCVK 279
C H T CGH FC++C+K
Sbjct: 300 CNHMTCSAPCGHEFCWICLK 319
>At2g31760.1 68415.m03878 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 514
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +1
Query: 223 CQHPT-KLSCGHVFCFLCVK 279
C H T SCGH FC++C K
Sbjct: 291 CNHMTCSASCGHRFCWICGK 310
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Frame = +1
Query: 154 VLKHAVL-IFSHNMEYDCAVCLQKCQHP--TKLSCGHVFCFLC 273
+LK V+ + ++ C +C + +SCGH +C C
Sbjct: 104 ILKEPVVDVNGTEVDIQCGICFESYTRKEIASVSCGHPYCKTC 146
>At3g16090.1 68416.m02033 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 492
Score = 28.3 bits (60), Expect = 1.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCVK 279
C +C ++ + KL CGH+F C++
Sbjct: 292 CIICREEMTNAKKLICGHLFHVHCLR 317
>At2g46660.1 68415.m05822 cytochrome P450, putative similar to
cytochrome p450 (CYP78A9)(GI:17065344) {Arabidopsis
thaliana}
Length = 530
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -2
Query: 325 GLYFVYLKKITKYFKPSHKENRKHD--RRIVLLDVDIFASKQHNHIPYYVRKLIQHA 161
G+Y+ L++I S K+ R+ + RR++ + F KQ ++ P +VR+L++ A
Sbjct: 159 GVYWRTLRRIASNHLFSTKQIRRAETQRRVISSQMVEFLEKQSSNEPCFVRELLKTA 215
>At2g31510.1 68415.m03850 IBR domain-containing protein /
ARIADNE-like protein ARI7 (ARI7) identical to
ARIADNE-like protein ARI7 [Arabidopsis thaliana]
GI:29125028; contains similarity to Swiss-Prot:Q94981
ariadne-1 protein (Ari-1) [Drosophila melanogaster];
contains Pfam profile PF01485: IBR domain
Length = 562
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +1
Query: 154 VLKHAVLIFSHNMEYDCAVCLQKCQHPTKL---SCGHVFCFLC 273
+L+ V+ S + E C +C P K+ SCGH FC C
Sbjct: 121 ILESHVVPPSDDSELTCGICFDSYP-PEKIASVSCGHPFCTTC 162
>At1g65430.1 68414.m07423 zinc finger protein-related contains weak
similarity to zinc finger proteins and a Pfam:PF01485
IBR domain
Length = 567
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 142 DNLCVLKHAVLIFSHNMEYDCAVCLQK--CQHPTKLSCGHVFCFLC 273
D + +L+ V+ F + E DC +C + +CGH FC C
Sbjct: 108 DAVGLLEKPVVDFPTDGELDCGICFETFLSDKLHAAACGHPFCDSC 153
>At5g01450.1 68418.m00058 expressed protein
Length = 444
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 196 YDCAVCLQKCQHPTKLSCGH-VFCFLC 273
Y CA+C + LSCGH V CF C
Sbjct: 391 YLCAICYDAPRDCFFLSCGHCVACFQC 417
>At1g54150.1 68414.m06173 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 27.9 bits (59), Expect = 1.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFC 264
C +C+ + + P + CGHV C
Sbjct: 331 CVICVSRRRVPAFIPCGHVVC 351
>At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 532
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Frame = +1
Query: 148 LCVLKHAVLIFSHNMEYD-----CAVCLQKCQHPTKLS--CGHVFCFLCVK 279
L + + AV I S N++ D C++C + Q LS C H FC C+K
Sbjct: 184 LSLAQVAVGIVSSNLDGDKPIENCSICCEDRQSEMMLSLKCTHKFCSHCMK 234
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 217 QKCQHPTKLSCGHVFCFLC 273
Q C H T CGH FC+ C
Sbjct: 389 QGCNHMT-CRCGHEFCYSC 406
>At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 278
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 202 CAVCLQKCQHPTKL-SCGHVFCFLCVK 279
C +CL + + L +C H FCF C+K
Sbjct: 22 CPICLGQFLRESYLDTCFHKFCFNCIK 48
>At1g65040.2 68414.m07372 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 281
Score = 27.5 bits (58), Expect = 2.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCVK 279
C +C ++ KL CGH+F C++
Sbjct: 113 CIICREEMTSAKKLVCGHLFHVHCLR 138
>At1g65040.1 68414.m07373 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 389
Score = 27.5 bits (58), Expect = 2.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCVK 279
C +C ++ KL CGH+F C++
Sbjct: 221 CIICREEMTSAKKLVCGHLFHVHCLR 246
>At1g62370.1 68414.m07037 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 27.5 bits (58), Expect = 2.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLC 273
C VC+ + + + CGH +C +C
Sbjct: 156 CCVCMGREKGAAFIPCGHTYCRVC 179
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 1287
Score = 27.5 bits (58), Expect = 2.4
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCV 276
C +C + CGHVFC C+
Sbjct: 993 CGICNDAPEDAVASVCGHVFCKQCI 1017
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 27.1 bits (57), Expect = 3.2
Identities = 8/26 (30%), Positives = 12/26 (46%)
Frame = +1
Query: 199 DCAVCLQKCQHPTKLSCGHVFCFLCV 276
+C +CL+ P C H C C+
Sbjct: 1039 ECPICLESADDPVLTPCAHRMCRECL 1064
>At4g29070.1 68417.m04159 expressed protein
Length = 259
Score = 27.1 bits (57), Expect = 3.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 62 INFGWIRTNIMCLSWSYYSN 3
++FGWI +N+ SWS+ N
Sbjct: 240 LDFGWIVSNLSKRSWSFQKN 259
>At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 438
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVF-CFLCVK 279
CA+CL + CGHV C C+K
Sbjct: 387 CAICLDAPSEAVCVPCGHVAGCMSCLK 413
>At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 462
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVF-CFLCVK 279
CA+CL + CGHV C C+K
Sbjct: 411 CAICLDAPSEAVCVPCGHVAGCMSCLK 437
>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 661
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = +1
Query: 190 MEYDCAVCLQKCQHPTKLS---CGHVFCFLC 273
+E C +C QK KL+ C +V CF C
Sbjct: 505 LEATCQICQQKATFLRKLNCIECDYVICFKC 535
>At1g54820.1 68414.m06249 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 458
Score = 27.1 bits (57), Expect = 3.2
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -2
Query: 265 NRKHDRRIVLLDVDIFASKQHNHIPYYVRKLIQHA*VHINYLILIYPF-PN 116
N+KH+ R L+VD+ + Q PY V +L+ + N+ ILIY F PN
Sbjct: 183 NQKHEERSFRLEVDLLSRLQ---CPYLV-ELLGYC-ADQNHRILIYEFMPN 228
>At1g15100.1 68414.m01803 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 155
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Frame = +1
Query: 199 DCAVCLQKC---QHPTKLSCGHVFCFLCVK 279
DC VCL K + KL C HVF C++
Sbjct: 85 DCVVCLSKLKEGEEVRKLECRHVFHKKCLE 114
>At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 655
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Frame = +1
Query: 190 MEYDCAVCLQKCQHPTKLS---CGHVFCFLCVK 279
++ +CA+C S C H FCF CVK
Sbjct: 297 LKEECAICFNDIVAEGMFSVDKCRHRFCFQCVK 329
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 217 QKCQHPTKLSCGHVFCFLC 273
Q C H T CGH FC+ C
Sbjct: 481 QGCNHIT-CRCGHEFCYNC 498
>At5g53910.1 68418.m06708 (S)-2-hydroxy-acid oxidase, peroxisomal,
putative / glycolate oxidase, putative / short chain
alpha-hydroxy acid oxidase, putative contains Pfam
profile: PF00097 zinc finger, C3HC4 type (RING finger)
Length = 230
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = +1
Query: 193 EYDCAVCLQKC---QHPTKLSCGHVFCFLCV 276
EY CA+C Q+ + L CGH F C+
Sbjct: 169 EYKCAICFQEFKTGREVATLLCGHEFDNKCI 199
>At5g51450.1 68418.m06378 zinc finger (C3HC4-type RING finger)
family protein contains similarity to autocrine motility
factor receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 577
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = +1
Query: 163 HAVLIFSHNME---YD--CAVCLQKCQHPTKLSCGHVFCFLCVK 279
HA L+ + + E YD CA+C + +L C H+F C++
Sbjct: 319 HAALLDATSEELRDYDDECAICREPMAKAKRLHCNHLFHLGCLR 362
>At4g12150.1 68417.m01930 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 357
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +1
Query: 202 CAVCLQKCQH-----PTKLSCGHVFCFLCVKV*NILLFFLNKRN 318
C++CLQ PT++SC HVF C L+ +LN++N
Sbjct: 153 CSICLQSLVSSSKTAPTRMSCSHVFHNGC------LVEWLNRKN 190
>At3g43750.1 68416.m04674 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 346
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Frame = +1
Query: 190 MEYDCAVCLQKCQHPTKLS----CGHVFCFLCVK 279
M C++C K+ CGH FC CVK
Sbjct: 151 MPATCSICFNNVLEAEKMFSVAICGHQFCVECVK 184
>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 388
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 199 DCAVCLQKCQHPTKLSCGHV-FCFLCVKV 282
+C +CL + + T L C H+ C C KV
Sbjct: 318 ECVICLSEPRDTTVLPCRHMCMCSGCAKV 346
>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type, domain
Length = 745
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 190 MEYDCAVCLQKCQHPTKLSCGH-VFCFLCVKV*NILLFFLNKRNIAL*K 333
M+ CAVC + + SCGH C CV L F LN R + K
Sbjct: 1 MDDSCAVCAENLEWVGYGSCGHREVCSTCVV---RLRFILNDRRCCICK 46
>At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam:PF01485 IBR
domain
Length = 537
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = +1
Query: 154 VLKHAVL-IFSHNMEYDCAVCLQKCQHP--TKLSCGHVFCFLC 273
+LK V+ + ++ C +C + ++SCGH +C C
Sbjct: 122 ILKEPVVDVNGTEVDIQCGICFESYTRKEIARVSCGHPYCKTC 164
>At1g55255.1 68414.m06311 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 383
Score = 26.6 bits (56), Expect = 4.2
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCVK 279
C VC + + + C H+FC C++
Sbjct: 331 CGVCFDRPKEVVIVKCYHLFCQQCIQ 356
>At1g51930.1 68414.m05854 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 132
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = +1
Query: 202 CAVCLQKCQHPTKL----SCGHVFCFLCV 276
C +CL++ + ++ +CGHVF LC+
Sbjct: 80 CPICLEEYEDDHQIRRLRNCGHVFHLLCI 108
>At1g32340.1 68414.m03985 zinc finger (C3HC4-type RING finger)
family protein contains a Zinc finger, C3HC4 type (RING
finger) signature, PROSITE:PS00518
Length = 688
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Frame = +1
Query: 196 YDCAVCLQKCQHP--TKLSCGHVFCFLCVK 279
++C +C + KL C H FC C+K
Sbjct: 376 HECCICFSESAGIDFVKLPCQHFFCLKCMK 405
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Frame = +1
Query: 193 EYDCAVCLQKCQH----PTKLSCGHVFCFLCV 276
E +C VCLQ P L+CGH C C+
Sbjct: 3 EPECPVCLQSYDGESTVPRVLACGHTACEECL 34
>At5g49110.1 68418.m06079 expressed protein ; expression supported
by MPSS
Length = 1487
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 201 LCCLLAKMSTSNKTILRSCFLFSLCEGLKYFVIFFK*TKYSPVKK 335
LC LLA + S I SC + S + LK +F +Y VK+
Sbjct: 85 LCSLLASLLISYTQIFNSCKIPSDSDSLKTIQLFGTLLRYLHVKE 129
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLC 273
C +C K T + CGHV C C
Sbjct: 4660 CQICQTKEVEVTIVPCGHVLCRHC 4683
>At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 262
Score = 26.2 bits (55), Expect = 5.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCV 276
C +C P + +CGH +C C+
Sbjct: 74 CPICFGSFTVPCRGNCGHWYCGNCI 98
>At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger)
family protein similar to autocrine motility factor
receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 578
Score = 26.2 bits (55), Expect = 5.6
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +1
Query: 199 DCAVCLQKCQHPTKLSCGHVFCFLCVK 279
+CA+C + +L C H+F C++
Sbjct: 336 ECAICREPMAKAKRLHCNHLFHLGCLR 362
>At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger)
family protein similar to autocrine motility factor
receptor [Mus musculus] GI:5931953; contains Pfam
profiles PF00097: Zinc finger, C3HC4 type (RING finger),
PF02845: CUE domain
Length = 578
Score = 26.2 bits (55), Expect = 5.6
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = +1
Query: 199 DCAVCLQKCQHPTKLSCGHVFCFLCVK 279
+CA+C + +L C H+F C++
Sbjct: 336 ECAICREPMAKAKRLHCNHLFHLGCLR 362
>At3g20680.1 68416.m02617 expressed protein
Length = 338
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -1
Query: 311 LFKKNNKIFQTFTQRKQKT*PQDSFVGC*HFCKQTAQSYSILCEKINTACL 159
LFK N++ F+ P +S + HF K +Q +S L K T L
Sbjct: 6 LFKLNSQTFKALNPSPPSLSPPNSRIFHLHFSKSLSQQHSKLNHKSTTTRL 56
>At1g72175.1 68414.m08345 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 26.2 bits (55), Expect = 5.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCV 276
C++C P + +C H FC C+
Sbjct: 10 CSICHSHFTAPCQANCSHWFCGNCI 34
>At1g61620.1 68414.m06943 expressed protein contains Pfam profile:
PF01363 FYVE zinc finger
Length = 310
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCV 276
C++CL+ P GHVFC C+
Sbjct: 43 CSLCLKPFIDPMCCHKGHVFCRECI 67
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Frame = +1
Query: 181 SHNMEYDCAVCLQKCQHPTKL----SCGHVFCFLCVK 279
S++ Y C C + L SCGHVFC C +
Sbjct: 214 SYDKSYICPSCKVTLTNTMSLVALSSCGHVFCKKCAE 250
>At5g57300.1 68418.m07158 UbiE/COQ5 methyltransferase family protein
similar to ubiquinone biosynthesis methyltransferase
COQ5 [Saccharomyces cerevisiae][SP|P49017],
ubiquinone/menaquinone biosynthesis methyltransferase
ubiE [Escherichia coli][SP|P27851]; contains Pfam
profile PF01209: methlytransferase, UbiE/COQ5 family
Length = 288
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 224 HFCKQTAQSYSILCEKINTACLSTHKLSHTYLPISKLLKYVCSFVVFHN 78
H K A++Y +L CL +LSH +P+ K L + SF V N
Sbjct: 185 HIEKALAEAYRVLKRGGRFLCL---ELSHVEIPVFKNLYDLYSFQVIPN 230
>At5g09760.1 68418.m01130 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 551
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 314 RLFKKNNKIFQTFTQRKQKT*PQDSFVGC 228
+LFK N K+ + F R K + F+GC
Sbjct: 452 KLFKANPKVHKNFLGRPWKDYSRTVFIGC 480
>At5g03070.1 68418.m00255 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 483
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 276 HTKKTENMTAG*FCWMLTFLQANSTI 199
H KKT+ TA W++ +L A S I
Sbjct: 262 HLKKTDEETATEIAWIIVYLSALSDI 287
>At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 25.8 bits (54), Expect = 7.4
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLC 273
C++C P +C H FC C
Sbjct: 86 CSICQNPFLDPVVTNCNHYFCDKC 109
>At3g54300.1 68416.m06001 synaptobrevin family protein similar to
vesicle-associated membrane protein 7B (At VAMP7B),
Arabidopsis thaliana, EMBL:AF025333
Length = 240
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 316 FVYLKKITKYFKPSHKENRKHDRRIVLLDVD 224
FV+L+++ + FK ++ + K+D R L D D
Sbjct: 79 FVFLERVKEDFKKRYEASIKNDERHPLADED 109
>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 769
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 166 AVLIFSHNMEYD-CAVCLQKCQHPTKLSC-GHVFC 264
+VL +H+M C +C ++C H T C G +C
Sbjct: 717 SVLPNNHHMSRPFCFICKKRCPHKTFFQCNGFEYC 751
>At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type(RING finger)
Length = 358
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Frame = +1
Query: 181 SHNMEYDCAVCLQKC-----QHPTKLSCGHVFCFLCV 276
S +E C++CL+ + KL CGH F C+
Sbjct: 31 SSPVEVSCSICLESVLDDGTRSKAKLQCGHQFHLDCI 67
>At1g23980.1 68414.m03028 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 zinc finger
protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
Pfam profile PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 369
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Frame = +1
Query: 196 YDCAVCLQKCQHPTKL----SCGHVFCFLCV 276
+DCAVCL + KL +C H F C+
Sbjct: 142 FDCAVCLCEFSEDDKLRLLPNCSHAFHIDCI 172
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCV 276
C +C + CGHVFC C+
Sbjct: 919 CGICNVAPKDAVVSLCGHVFCNQCI 943
>At5g57820.1 68418.m07231 hypothetical protein
Length = 161
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 214 LQKCQHPTKLSCGHVFCFLCVK 279
L Q LSCGHV+ F C++
Sbjct: 119 LSGLQEACVLSCGHVYHFKCLR 140
>At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 508
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLC 273
CAVCL++ C H FC C
Sbjct: 321 CAVCLERKCTVAADGCAHEFCTNC 344
>At5g40250.1 68418.m04883 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 finger protein RHX1a
[Arabidopsis thaliana] GI:3790591; contains Pfam profile
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 376
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Frame = +1
Query: 196 YDCAVCLQKCQHPTKL----SCGHVFCFLCV 276
+DCAVCL + KL C H F C+
Sbjct: 141 FDCAVCLCEFSEKDKLRLLPMCSHAFHLNCI 171
>At5g03200.1 68418.m00268 zinc finger (C3HC4-type RING finger)
family protein contains weak similarity to zinc finger
proteins
Length = 337
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +1
Query: 199 DCAVCLQKCQHPTKLSCGHV-FCFLCVK 279
+C VCL + + T L C H+ C C K
Sbjct: 284 ECVVCLSEPRDTTVLPCRHMCMCSGCAK 311
>At4g00070.1 68417.m00007 zinc finger protein-related contains
similarity to zinc finger proteins (C3HC4-type RING
finger)
Length = 200
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Frame = +1
Query: 202 CAVC---LQKCQHPTKLSCGHVFCFLCVK 279
C +C QK KL+CGH F CVK
Sbjct: 165 CCICQDGFQKRAGVGKLNCGHNFHVNCVK 193
>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
domain-containing protein / F-box family protein similar
to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces
pombe}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00646: F-box domain
Length = 1378
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 199 DCAVCLQKCQHPTKLSCGHVFCFLCV 276
+C C + C+ P C H+ C CV
Sbjct: 1047 NCKRCGEWCRLPVITPCRHLLCLDCV 1072
>At3g53410.1 68416.m05894 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 299
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +1
Query: 199 DCAVCLQKCQHPTKLSCGHV-FCFLCVKV 282
+C +CL + + T L C H+ C C K+
Sbjct: 242 ECVICLSEPRDTTVLPCRHMCMCSGCAKL 270
>At3g05680.1 68416.m00634 expressed protein
Length = 2057
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 201 LCCLLAKMSTSNKTILRSCFLFSLCEG 281
LC +L K+S T+L F LC G
Sbjct: 261 LCTVLPKLSKGKATLLGLSLAFLLCSG 287
>At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domains PF00533: BRCA1 C Terminus (BRCT) domain and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 453
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 193 EYDCAVCLQKCQHPTK-LSCGHVFCFLCVK 279
+ C +C + L CGH FC+ C++
Sbjct: 297 QVSCIICWTEFSSSRGILPCGHRFCYSCIQ 326
>At1g22510.1 68414.m02812 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 185
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = +1
Query: 202 CAVCLQKCQHPTKLSCGHVFCFLCV 276
C++C P + +C H FC C+
Sbjct: 10 CSICHGHFNAPCQSNCSHWFCGNCI 34
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,077,346
Number of Sequences: 28952
Number of extensions: 131840
Number of successful extensions: 498
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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