Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h11r
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    27   3.9  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   9.0  

>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 185 VEVLYNFFYTNLRQ*FFYYIYELFECAIRDFHQIELEV 72
           VE L N F+ N++   F Y    F+C +  F  +E ++
Sbjct: 246 VEFLINSFFINVQTNLFVYHPHFFKCRLEIFLAMENQI 283


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +1

Query: 256 LDKYLELIHL*CFCNSVRDCKGGHTDIIEPLKLTTSYFVNSFVSSTLF 399
           +DK L L+ L  F   +R+    ++  I  +    +YF+NSF+SST F
Sbjct: 715 IDK-LALVQLDKFQTEIRELYESYS--INKVVHHLNYFMNSFLSSTYF 759


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,854
Number of Sequences: 5004
Number of extensions: 56508
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)