Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h11r
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)                 29   4.1  
SB_1067| Best HMM Match : Trigger_C (HMM E-Value=0.73)                 29   5.5  
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   7.2  

>SB_11899| Best HMM Match : LRR_1 (HMM E-Value=1.2e-20)
          Length = 681

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 398 KSVEETKELTKYDVVNLSGSMISVCPPLQSLTELQ 294
           + +   + LTK DV++L G+ IS    L  LTEL+
Sbjct: 220 RKINNLEALTKLDVLDLHGNRISKIENLSHLTELR 254


>SB_1067| Best HMM Match : Trigger_C (HMM E-Value=0.73)
          Length = 639

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 295 CNSVRDCKGGHTDIIEPLKLTTSYFVNS 378
           CN        H D+I P K+  S+F NS
Sbjct: 90  CNGYSAIPTNHADVISPWKIRISFFANS 117


>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 1841

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 250 CVKGLWINVKNIIQTIFSLDRSLKFY 173
           C+KG+ +N KN++Q I S+   LK Y
Sbjct: 912 CLKGVDVNKKNLLQGIGSVSSVLKTY 937


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,803,494
Number of Sequences: 59808
Number of extensions: 355164
Number of successful extensions: 706
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)