BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11h11f (582 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_1361 - 36663859-36663985,36664353-36664543,36664746-366650... 114 4e-26 03_06_0026 - 31118997-31119113,31119700-31119900,31120032-311202... 96 2e-20 10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657 29 2.0 02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817 28 6.2 >01_06_1361 - 36663859-36663985,36664353-36664543,36664746-36665009, 36665215-36665373,36665476-36665679,36665765-36665983, 36666191-36666322,36666406-36666523,36666670-36666854, 36667263-36667355,36667819-36668008,36668500-36668585, 36668671-36668847,36669141-36669320,36669423-36669623 Length = 841 Score = 114 bits (275), Expect = 4e-26 Identities = 53/121 (43%), Positives = 72/121 (59%) Frame = +2 Query: 215 PRDYYFALAHTVKDHLVSRWIRTQQYYYENDPKRVYYLSLEYYMGRSLQNTMINLGIQGT 394 P +++ A +V+DHLV RW T ++++ DPK+ YYLS+EY GR+L N + NLGI G Sbjct: 50 PEQAFYSTAESVRDHLVQRWNETYLHFHKTDPKQTYYLSMEYLQGRALTNAVGNLGITGA 109 Query: 395 VDEALYQXXXXXXXXXXXXXXXXXXXXXXXRLAACFLDSMATLGLAAYGYGIRYEYGIFA 574 EA+ + RLA+CFLDSMATL L A+GYG+RY YG+F Sbjct: 110 YAEAVKKFGYELEALVGQEKDAALGNGGLGRLASCFLDSMATLNLPAWGYGLRYRYGLFK 169 Query: 575 Q 577 Q Sbjct: 170 Q 170 >03_06_0026 - 31118997-31119113,31119700-31119900,31120032-31120218, 31120339-31120415,31120738-31120815,31120858-31120974, 31121047-31121175,31121327-31121479,31121589-31122044, 31122122-31122239,31122385-31122575,31123140-31123415, 31123524-31123700,31124040-31124141,31124227-31124459, 31125563-31125764 Length = 937 Score = 95.9 bits (228), Expect = 2e-20 Identities = 50/133 (37%), Positives = 68/133 (51%) Frame = +2 Query: 173 HVHYTLVKDRNVATPRDYYFALAHTVKDHLVSRWIRTQQYYYENDPKRVYYLSLEYYMGR 352 H +T V +P Y A A +V D L+ W T YY + K+ YYLS+E+ GR Sbjct: 88 HAEFTPVFSPEHFSPLKAYHATAKSVLDTLIMNWNATYDYYDRTNVKQAYYLSMEFLQGR 147 Query: 353 SLQNTMINLGIQGTVDEALYQXXXXXXXXXXXXXXXXXXXXXXXRLAACFLDSMATLGLA 532 +L N + NL + G EAL Q RLA+CFLDS+ATL Sbjct: 148 ALTNAVGNLELTGQYAEALQQLGHSLEDVATQEPDAALGNGGLGRLASCFLDSLATLNYP 207 Query: 533 AYGYGIRYEYGIF 571 A+GYG+RY++G+F Sbjct: 208 AWGYGLRYKHGLF 220 >10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657 Length = 1032 Score = 29.5 bits (63), Expect = 2.0 Identities = 11/16 (68%), Positives = 13/16 (81%) Frame = -1 Query: 573 ANIPYSYLIPYPYAAR 526 AN PYSY IP PY+A+ Sbjct: 106 ANYPYSYAIPVPYSAQ 121 >02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817 Length = 633 Score = 27.9 bits (59), Expect = 6.2 Identities = 12/19 (63%), Positives = 12/19 (63%) Frame = +1 Query: 160 GVQSSCPLHFSERSKCCDP 216 GVQSS P FS K CDP Sbjct: 563 GVQSSYPYDFSGNPKLCDP 581 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,461,468 Number of Sequences: 37544 Number of extensions: 283340 Number of successful extensions: 658 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 647 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 656 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1364465340 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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