Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h11f
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)          239   1e-63
SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                29   3.7  
SB_45460| Best HMM Match : Keratin_B2 (HMM E-Value=0.11)               29   3.7  
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_29040| Best HMM Match : Keratin_B2 (HMM E-Value=0.44)               28   4.8  
SB_3987| Best HMM Match : Metallothio_PEC (HMM E-Value=8.6)            28   6.4  
SB_52739| Best HMM Match : GCV_H (HMM E-Value=2)                       27   8.5  
SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   8.5  
SB_37338| Best HMM Match : FMO-like (HMM E-Value=2.1e-21)              27   8.5  

>SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)
          Length = 398

 Score =  239 bits (585), Expect = 1e-63
 Identities = 113/165 (68%), Positives = 126/165 (76%)
 Frame = +2

Query: 86  TDAEKRKQISVRGIVAVENVTEVKKAFNRHVHYTLVKDRNVATPRDYYFALAHTVKDHLV 265
           TDAEK++QIS+R +  VE+V  +K+AFNRH+HY+LVKDRNVAT +DYYFALAHTVKDHLV
Sbjct: 41  TDAEKKRQISMRRLPVVEDVNGIKEAFNRHLHYSLVKDRNVATTQDYYFALAHTVKDHLV 100

Query: 266 SRWIRTQQYYYENDPKRVYYLSLEYYMGRSLQNTMINLGIQGTVDEALYQXXXXXXXXXX 445
            +WIRTQQ YYE DPKRVYYLSLEYYMGR+L NTMINLGIQG  DEA YQ          
Sbjct: 101 GKWIRTQQTYYEKDPKRVYYLSLEYYMGRALSNTMINLGIQGECDEAAYQLGLDMEELEE 160

Query: 446 XXXXXXXXXXXXXRLAACFLDSMATLGLAAYGYGIRYEYGIFAQK 580
                        RLAACFLDSMATLG  AYGYGIRYEYGIF Q+
Sbjct: 161 MEEDAGLGNGGLGRLAACFLDSMATLGYPAYGYGIRYEYGIFKQE 205


>SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 1357

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 493 SLFPRLYGDIRSCCVWIWYKVRIWYICS 576
           ++ PRLYG   SCCV   Y  R +  CS
Sbjct: 254 NILPRLYGVHTSCCVRRTYDNRKYICCS 281



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 493 SLFPRLYGDIRSCCVWIWYKVRIWYICS 576
           ++ PRLYG   SCCV   Y  R +  CS
Sbjct: 370 NILPRLYGVHTSCCVRRTYDNRKYTCCS 397


>SB_45460| Best HMM Match : Keratin_B2 (HMM E-Value=0.11)
          Length = 759

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 493 SLFPRLYGDIRSCCVWIWYKVRIWYICS 576
           ++ PRLYG   SCCV   Y  R +  CS
Sbjct: 181 NILPRLYGVHTSCCVRRTYDNRKYICCS 208


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 160  GVQSSCPLHFSERSKCCDPAGLLFCSRTHRERSSCLQVDSYSTI 291
            G +  CP     +   C    L + S+ H ER+SC Q+  Y TI
Sbjct: 1858 GFECICPTCPKAKDYLCASNNLTYMSKCHLERASC-QLGRYLTI 1900


>SB_29040| Best HMM Match : Keratin_B2 (HMM E-Value=0.44)
          Length = 319

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 493 SLFPRLYGDIRSCCVWIWYKVRIWYICS 576
           ++ PRLYG   SCCV   Y  R +  CS
Sbjct: 65  NILPRLYGVHTSCCVRRTYDNRKFICCS 92


>SB_3987| Best HMM Match : Metallothio_PEC (HMM E-Value=8.6)
          Length = 209

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 239 REQNSNPAGSQHFDLSLKCNGHDD*TPSLLQSHFRQQQF 123
           RE  S   GS+ F ++  C        SLLQ+H R Q +
Sbjct: 156 RETRSRSVGSRRFSVNTVCTDLAPVGTSLLQAHSRTQSY 194


>SB_52739| Best HMM Match : GCV_H (HMM E-Value=2)
          Length = 561

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -2

Query: 290 IVEYESTWRQDDLSRCVRE-QNSNPAGSQ 207
           I + +STWR   + RC +E +   PA  Q
Sbjct: 481 ITQVQSTWRASTVGRCCKEREGGKPAADQ 509


>SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 927

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 133 CRKCD*SKEGVQSSCPLHFSERSKCCDPAGLLFCSRTH 246
           C KC   K  +++   +H  ++   CD  G  F  +TH
Sbjct: 192 CGKCFTRKANLKTHLVIHSGQKPYKCDECGKCFTQQTH 229


>SB_37338| Best HMM Match : FMO-like (HMM E-Value=2.1e-21)
          Length = 433

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -2

Query: 296 NSIVEYESTWRQDDLSR-----CVREQNSNPAGSQHFDLSLKCNGH 174
           N+ VE+ +   +DD++       +R  NSN   +  FD  + C GH
Sbjct: 114 NTTVEHIAPLNEDDVNNPRWEVTIRNLNSNKKSTSTFDAVVVCTGH 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,389,368
Number of Sequences: 59808
Number of extensions: 364837
Number of successful extensions: 1224
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)