Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h11f
         (582 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46970.1 68416.m05100 starch phosphorylase, putative similar ...   102   2e-22
At3g29320.1 68416.m03682 glucan phosphorylase, putative similar ...   101   3e-22
At5g45113.1 68418.m05537 mitochondrial transcription termination...    30   0.98 
At1g61770.1 68414.m06966 DNAJ heat shock N-terminal domain-conta...    28   5.2  
At1g56415.1 68414.m06488 Expressed protein                             28   5.2  
At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr...    27   6.9  
At4g00360.1 68417.m00050 cytochrome P450, putative                     27   9.1  
At1g18860.1 68414.m02348 WRKY family transcription factor contai...    27   9.1  

>At3g46970.1 68416.m05100 starch phosphorylase, putative similar to
           alpha-glucan phosphorylase, H isozyme SP:P32811 from
           [Solanum tuberosum]
          Length = 841

 Score =  102 bits (245), Expect = 2e-22
 Identities = 54/158 (34%), Positives = 80/158 (50%)
 Frame = +2

Query: 104 KQISVRGIVAVENVTEVKKAFNRHVHYTLVKDRNVATPRDYYFALAHTVKDHLVSRWIRT 283
           ++IS +     ++ TE+      H  Y+         P    +A A +++D L+  W  T
Sbjct: 14  EKISAKANPEADDATEIAGNIVYHAKYSPHFSPLKFGPEQALYATAESLRDRLIQLWNET 73

Query: 284 QQYYYENDPKRVYYLSLEYYMGRSLQNTMINLGIQGTVDEALYQXXXXXXXXXXXXXXXX 463
             ++ + DPK+ YYLS+EY  GR+L N + NL +QG   +AL                  
Sbjct: 74  YVHFNKVDPKQTYYLSMEYLQGRALTNAIGNLNLQGPYADALRTLGYELEEIAEQEKDAA 133

Query: 464 XXXXXXXRLAACFLDSMATLGLAAYGYGIRYEYGIFAQ 577
                  RLA+CFLDSMATL L A+GYG+RY +G+F Q
Sbjct: 134 LGNGGLGRLASCFLDSMATLNLPAWGYGLRYRHGLFKQ 171


>At3g29320.1 68416.m03682 glucan phosphorylase, putative similar to
           alpha-glucan phosphorylase, L isozyme 1 precursor
           GB:P04045 from [Solanum tuberosum] (J. Biochem. 106 (4),
           691-695 (1989))
          Length = 962

 Score =  101 bits (242), Expect = 3e-22
 Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 1/165 (0%)
 Frame = +2

Query: 89  DAEKRKQISVRGIVAVENVTEVKKAFNRHVHYT-LVKDRNVATPRDYYFALAHTVKDHLV 265
           D+E+   IS     A +    V  +   H  +T L        P+ + FA A +V+D L+
Sbjct: 76  DSEQEVFISSMNPFAPD-AASVASSIKYHAEFTPLFSPEKFELPKAF-FATAQSVRDALI 133

Query: 266 SRWIRTQQYYYENDPKRVYYLSLEYYMGRSLQNTMINLGIQGTVDEALYQXXXXXXXXXX 445
             W  T +YY   + K+ YYLS+E+  GR+L N + NLG+     +AL +          
Sbjct: 134 MNWNATYEYYNRVNVKQAYYLSMEFLQGRALSNAVGNLGLNSAYGDALKRLGFDLESVAS 193

Query: 446 XXXXXXXXXXXXXRLAACFLDSMATLGLAAYGYGIRYEYGIFAQK 580
                        RLA+CFLDSMATL   A+GYG+RY+YG+F Q+
Sbjct: 194 QEPDPALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQR 238


>At5g45113.1 68418.m05537 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 414

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 406 CFVNSTLDAKVDHGILKRTPHIVLQGQIVDSLRIIFII 293
           CFV + LD  V   ++KR PHI+ + + +   +II +I
Sbjct: 297 CFVKAGLDYNVVSQLVKRAPHILNRPKDIIEKKIIMLI 334


>At1g61770.1 68414.m06966 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9UBS4 DnaJ
           homolog subfamily B member 11 precursor Homo sapiens;
           contains Pfam profile PF00226 DnaJ domain
          Length = 300

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
 Frame = +2

Query: 38  LAIILL*ISLN-KMSVQTDAEKRKQISVRGIVAVENVTEVKKAFNRHVHYTLVKDRNVAT 214
           LA+ILL +SL  + S           ++ G+    N +++K+++ + +      D+N   
Sbjct: 11  LALILLFLSLFVQSSTAIYCGAEDCYALLGVAQDANASDIKRSYYK-LSLQHHPDKNPDP 69

Query: 215 PRDYYFALAHTVKDHLVSRWIRTQQYYYENDPKRVYYLSLEYYMGR 352
                F    T  + L     R Q  Y    P+ V+Y + +YY  +
Sbjct: 70  ESRKLFVKIATAYEILKDNTTRAQYDYAIEHPEEVFYNTAQYYRAK 115


>At1g56415.1 68414.m06488 Expressed protein
          Length = 94

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
 Frame = +1

Query: 115 CQRNCCCRKCD*SKEGVQSSCPLHFS---ERSKCCDPAGLLF--CSRTHRERSSCLQ 270
           C+R  C  KC  SK    S C +H +     SK   P  L    C    R  ++C Q
Sbjct: 26  CKRTTCATKCRDSKSFACSDCIIHCAFPGSESKISQPRALCLRNCDVGCRPSNTCYQ 82


>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
           protein 
          Length = 571

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
 Frame = -2

Query: 326 NSRLS*DHFHNSIVEYEST----WRQDDLSRCVREQNSNPAGSQHFDLSLKCNGH 174
           N  +  +H  NS++E        W+ D ++    +   N    QH+D     NGH
Sbjct: 490 NEMVQAEHVRNSLLEITRNTSRGWQDDQMATGSMQNEKNEVDYQHYDDHQHHNGH 544


>At4g00360.1 68417.m00050 cytochrome P450, putative 
          Length = 553

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/66 (22%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = -3

Query: 346 HIVLQGQIVDSLRIIFIIVLLSTNPPGDKMIFHGVCESKIVIPRGRNISIFH*SVMDM-T 170
           + +L G+   S+ + +   L++T+P  +  I   +C S ++  RG ++S +    ++   
Sbjct: 303 NFILAGRDTSSVALSWFFWLITTHPTVEDKIVREIC-SVLIETRGTDVSSWTAEPLEFDE 361

Query: 169 IERLLY 152
           ++RL+Y
Sbjct: 362 VDRLVY 367


>At1g18860.1 68414.m02348 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 480

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -2

Query: 230 NSNPAGSQHFDLSLKCNGHDD*TPSLLQSHFRQQQFL*QISVYAFPRQSVRSS 72
           N  P    HF  S   +GH   T  L  S   QQ FL  ++ ++ P  +V  S
Sbjct: 293 NITPKPKTHFLQSPSSSGHPTVTLDLTTSSSSQQPFLSMLNRFSSPPSNVSRS 345


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,980,272
Number of Sequences: 28952
Number of extensions: 240982
Number of successful extensions: 629
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)