BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11h11f (582 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g46970.1 68416.m05100 starch phosphorylase, putative similar ... 102 2e-22 At3g29320.1 68416.m03682 glucan phosphorylase, putative similar ... 101 3e-22 At5g45113.1 68418.m05537 mitochondrial transcription termination... 30 0.98 At1g61770.1 68414.m06966 DNAJ heat shock N-terminal domain-conta... 28 5.2 At1g56415.1 68414.m06488 Expressed protein 28 5.2 At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr... 27 6.9 At4g00360.1 68417.m00050 cytochrome P450, putative 27 9.1 At1g18860.1 68414.m02348 WRKY family transcription factor contai... 27 9.1 >At3g46970.1 68416.m05100 starch phosphorylase, putative similar to alpha-glucan phosphorylase, H isozyme SP:P32811 from [Solanum tuberosum] Length = 841 Score = 102 bits (245), Expect = 2e-22 Identities = 54/158 (34%), Positives = 80/158 (50%) Frame = +2 Query: 104 KQISVRGIVAVENVTEVKKAFNRHVHYTLVKDRNVATPRDYYFALAHTVKDHLVSRWIRT 283 ++IS + ++ TE+ H Y+ P +A A +++D L+ W T Sbjct: 14 EKISAKANPEADDATEIAGNIVYHAKYSPHFSPLKFGPEQALYATAESLRDRLIQLWNET 73 Query: 284 QQYYYENDPKRVYYLSLEYYMGRSLQNTMINLGIQGTVDEALYQXXXXXXXXXXXXXXXX 463 ++ + DPK+ YYLS+EY GR+L N + NL +QG +AL Sbjct: 74 YVHFNKVDPKQTYYLSMEYLQGRALTNAIGNLNLQGPYADALRTLGYELEEIAEQEKDAA 133 Query: 464 XXXXXXXRLAACFLDSMATLGLAAYGYGIRYEYGIFAQ 577 RLA+CFLDSMATL L A+GYG+RY +G+F Q Sbjct: 134 LGNGGLGRLASCFLDSMATLNLPAWGYGLRYRHGLFKQ 171 >At3g29320.1 68416.m03682 glucan phosphorylase, putative similar to alpha-glucan phosphorylase, L isozyme 1 precursor GB:P04045 from [Solanum tuberosum] (J. Biochem. 106 (4), 691-695 (1989)) Length = 962 Score = 101 bits (242), Expect = 3e-22 Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 1/165 (0%) Frame = +2 Query: 89 DAEKRKQISVRGIVAVENVTEVKKAFNRHVHYT-LVKDRNVATPRDYYFALAHTVKDHLV 265 D+E+ IS A + V + H +T L P+ + FA A +V+D L+ Sbjct: 76 DSEQEVFISSMNPFAPD-AASVASSIKYHAEFTPLFSPEKFELPKAF-FATAQSVRDALI 133 Query: 266 SRWIRTQQYYYENDPKRVYYLSLEYYMGRSLQNTMINLGIQGTVDEALYQXXXXXXXXXX 445 W T +YY + K+ YYLS+E+ GR+L N + NLG+ +AL + Sbjct: 134 MNWNATYEYYNRVNVKQAYYLSMEFLQGRALSNAVGNLGLNSAYGDALKRLGFDLESVAS 193 Query: 446 XXXXXXXXXXXXXRLAACFLDSMATLGLAAYGYGIRYEYGIFAQK 580 RLA+CFLDSMATL A+GYG+RY+YG+F Q+ Sbjct: 194 QEPDPALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQR 238 >At5g45113.1 68418.m05537 mitochondrial transcription termination factor-related / mTERF-related contains Pfam profile PF02536: mTERF Length = 414 Score = 30.3 bits (65), Expect = 0.98 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -3 Query: 406 CFVNSTLDAKVDHGILKRTPHIVLQGQIVDSLRIIFII 293 CFV + LD V ++KR PHI+ + + + +II +I Sbjct: 297 CFVKAGLDYNVVSQLVKRAPHILNRPKDIIEKKIIMLI 334 >At1g61770.1 68414.m06966 DNAJ heat shock N-terminal domain-containing protein similar to SP|Q9UBS4 DnaJ homolog subfamily B member 11 precursor Homo sapiens; contains Pfam profile PF00226 DnaJ domain Length = 300 Score = 27.9 bits (59), Expect = 5.2 Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Frame = +2 Query: 38 LAIILL*ISLN-KMSVQTDAEKRKQISVRGIVAVENVTEVKKAFNRHVHYTLVKDRNVAT 214 LA+ILL +SL + S ++ G+ N +++K+++ + + D+N Sbjct: 11 LALILLFLSLFVQSSTAIYCGAEDCYALLGVAQDANASDIKRSYYK-LSLQHHPDKNPDP 69 Query: 215 PRDYYFALAHTVKDHLVSRWIRTQQYYYENDPKRVYYLSLEYYMGR 352 F T + L R Q Y P+ V+Y + +YY + Sbjct: 70 ESRKLFVKIATAYEILKDNTTRAQYDYAIEHPEEVFYNTAQYYRAK 115 >At1g56415.1 68414.m06488 Expressed protein Length = 94 Score = 27.9 bits (59), Expect = 5.2 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 5/57 (8%) Frame = +1 Query: 115 CQRNCCCRKCD*SKEGVQSSCPLHFS---ERSKCCDPAGLLF--CSRTHRERSSCLQ 270 C+R C KC SK S C +H + SK P L C R ++C Q Sbjct: 26 CKRTTCATKCRDSKSFACSDCIIHCAFPGSESKISQPRALCLRNCDVGCRPSNTCYQ 82 >At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family protein Length = 571 Score = 27.5 bits (58), Expect = 6.9 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Frame = -2 Query: 326 NSRLS*DHFHNSIVEYEST----WRQDDLSRCVREQNSNPAGSQHFDLSLKCNGH 174 N + +H NS++E W+ D ++ + N QH+D NGH Sbjct: 490 NEMVQAEHVRNSLLEITRNTSRGWQDDQMATGSMQNEKNEVDYQHYDDHQHHNGH 544 >At4g00360.1 68417.m00050 cytochrome P450, putative Length = 553 Score = 27.1 bits (57), Expect = 9.1 Identities = 15/66 (22%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = -3 Query: 346 HIVLQGQIVDSLRIIFIIVLLSTNPPGDKMIFHGVCESKIVIPRGRNISIFH*SVMDM-T 170 + +L G+ S+ + + L++T+P + I +C S ++ RG ++S + ++ Sbjct: 303 NFILAGRDTSSVALSWFFWLITTHPTVEDKIVREIC-SVLIETRGTDVSSWTAEPLEFDE 361 Query: 169 IERLLY 152 ++RL+Y Sbjct: 362 VDRLVY 367 >At1g18860.1 68414.m02348 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA -binding domain Length = 480 Score = 27.1 bits (57), Expect = 9.1 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = -2 Query: 230 NSNPAGSQHFDLSLKCNGHDD*TPSLLQSHFRQQQFL*QISVYAFPRQSVRSS 72 N P HF S +GH T L S QQ FL ++ ++ P +V S Sbjct: 293 NITPKPKTHFLQSPSSSGHPTVTLDLTTSSSSQQPFLSMLNRFSSPPSNVSRS 345 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,980,272 Number of Sequences: 28952 Number of extensions: 240982 Number of successful extensions: 629 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 600 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 627 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1141585696 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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