Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h10r
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0460 - 23118221-23118406,23118417-23118671,23118763-231188... 30 1.6
04_03_1029 - 21835441-21835856,21836666-21836852 30 2.1
06_01_0912 - 7036420-7037503,7037599-7037819 29 2.8
12_02_0160 + 14585559-14586230 29 4.9
11_01_0385 + 2915532-2916482 29 4.9
04_04_0387 + 24869594-24871480 29 4.9
01_06_0393 + 28968873-28968918,28969048-28969084,28969165-289693... 29 4.9
09_03_0210 - 13509814-13510965 28 6.4
05_01_0258 + 1984666-1984878,1985019-1985852 28 8.5
01_01_0079 - 603019-603129,603302-603367,603489-603554,603681-60... 28 8.5
>02_04_0460 -
23118221-23118406,23118417-23118671,23118763-23118851,
23119527-23119605,23121317-23121484,23121760-23122137
Length = 384
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 711 ICSCHISLHSLPCWRLFVHTAGW 643
I CH+ L SLPCW ++ + G+
Sbjct: 310 IRKCHLQLSSLPCWNVYSNYHGY 332
>04_03_1029 - 21835441-21835856,21836666-21836852
Length = 200
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 465 PPNSCGRGGESSYGSPQMPHFPLLVSH*RWKPPQLMP 575
P CGR E +G P+ P L +W+ P+L P
Sbjct: 97 PREECGRRDEGPHGPPRAPLPDLHRGREQWRAPRLRP 133
>06_01_0912 - 7036420-7037503,7037599-7037819
Length = 434
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/60 (28%), Positives = 22/60 (36%)
Frame = -2
Query: 361 LCTDPSNNEQECFEKYLLELEDGGTKYYPKSSGRYDVRYRLPAGVSCEHCVLQWTYTAGN 182
LC P Q F L GT Y + V R A SC++ V +W G+
Sbjct: 41 LCCSPPGGHQAVFSPLLQYFNGNGT--YSSNISSSGVEERSSAAASCDYSVGRWVRAPGH 98
>12_02_0160 + 14585559-14586230
Length = 223
Score = 28.7 bits (61), Expect = 4.9
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = -2
Query: 688 AFVALLATVRAHGRVVEPASRA---SXWRAGFGTRINYDDDGINCGGFHRQWETNNGKCG 518
A + A+ R G E A R WR G + DG R+W+ G+ G
Sbjct: 46 AATGVAASPRGGGVAAETARRRRRRQRWRGGRRGEVETTGDG-------RRWQ---GRGG 95
Query: 517 ICGDPYDDSPPRPHELG 467
G D+PP P ELG
Sbjct: 96 AAGAQDLDAPPMPRELG 112
>11_01_0385 + 2915532-2916482
Length = 316
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 613 ARXKLEMRAPPPCRVHEQSPTRQRMQG 693
++ K E RAPPP + HE++P + + G
Sbjct: 102 SKHKDEERAPPPKKHHEKAPPKSKHHG 128
>04_04_0387 + 24869594-24871480
Length = 628
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 299 RWRHEVLPEEQWSLRREVS 243
RWR + LP EQW+L EV+
Sbjct: 266 RWRPDELPWEQWTLSAEVA 284
>01_06_0393 +
28968873-28968918,28969048-28969084,28969165-28969384,
28969557-28969715,28969831-28969950,28972154-28972240,
28972329-28972418,28972516-28972602,28972761-28972877,
28972945-28973028,28973585-28975324,28975670-28975816,
28975998-28976431,28976523-28976667
Length = 1170
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 181 NWGVCPNGTGALGCGNQETFWACTDVS 101
NWG G LGCG + ++W VS
Sbjct: 547 NWGDGSYNVGLLGCGTEVSYWLPKKVS 573
>09_03_0210 - 13509814-13510965
Length = 383
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Frame = -2
Query: 298 DGGTKYYPKSSG---RYDVRYRLPAGVSCEHCVLQWTYTAG-----NNWG 173
DG + PKSS +Y G CE C W+Y G NWG
Sbjct: 321 DGELAFVPKSSSSNTKYSTMGDHSNGTCCEKCADVWSYKLGQQETRENWG 370
>05_01_0258 + 1984666-1984878,1985019-1985852
Length = 348
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -2
Query: 694 FLAFVALLATVRAHGRVVEPASRASXWRAGFG 599
F A ALL A G VVE A A+ W FG
Sbjct: 286 FHADWALLTGKEARGHVVEYAKNATLWNVDFG 317
>01_01_0079 -
603019-603129,603302-603367,603489-603554,603681-603824,
603932-604429
Length = 294
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 502 YDDSPPRPHELGGAYGNGV 446
YDD P P E+ G +GNGV
Sbjct: 20 YDDEPSMPLEILGYHGNGV 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,861,032
Number of Sequences: 37544
Number of extensions: 572407
Number of successful extensions: 1770
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1766
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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