Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h10r
(716 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05) 155 3e-38
SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012) 153 1e-37
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06) 129 2e-30
SB_28578| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 2e-11
SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7) 58 7e-09
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10) 29 3.8
SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40) 28 6.6
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_41239| Best HMM Match : 7tm_6 (HMM E-Value=0.091) 28 8.7
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 28 8.7
SB_30331| Best HMM Match : Amidase (HMM E-Value=0) 28 8.7
>SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)
Length = 288
Score = 155 bits (376), Expect = 3e-38
Identities = 81/209 (38%), Positives = 115/209 (55%), Gaps = 3/209 (1%)
Frame = -2
Query: 709 MQLSYFLAFVALLATVRAHGRVVEPASRASXWRAGFGT-RINYDDDGINCGGFHRQWETN 533
M+L L +L A HG + PA+R + GF Y D NCGG QW+ N
Sbjct: 1 MKLFSLLLIASLTALALGHGYIKNPAARNVCRKYGFDKCPREYTPDEKNCGGIGTQWDKN 60
Query: 532 NGKCGICGDPYDDSPPRPHEL-GGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKLC 356
GKCG+CGD YD+ P+P + G + G I Y GQ+ + + IT H+G+ EF++
Sbjct: 61 GGKCGVCGDRYDN--PKPTLVYPGKFATGTITGIYKEGQLFELELHITVSHKGWSEFRVG 118
Query: 355 TDPSNNEQECFEKYLLELEDGGTKY-YPKSSGRYDVRYRLPAGVSCEHCVLQWTYTAGNN 179
+ + +LL+LEDG T++ +P G Y + +LPAG+ C HCVLQW + GN+
Sbjct: 119 DIGAPPITQAKLNHLLKLEDGTTRWMHPGKIGLYKIMLQLPAGLKCRHCVLQWWWRTGNS 178
Query: 178 WGVCPNGTGALGCGNQETFWACTDVSIKP 92
WG +G G +G G QE F C D++IKP
Sbjct: 179 WGCDSDGCG-MGHGPQEHFVNCADITIKP 206
>SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)
Length = 281
Score = 153 bits (372), Expect = 1e-37
Identities = 81/209 (38%), Positives = 117/209 (55%), Gaps = 3/209 (1%)
Frame = -2
Query: 709 MQLSYFLAFVALLATVRAHGRVVEPASRASXWRAGFGTRI-NYDDDGINCGGFHRQWETN 533
M+L L +L A HG + PA+R + + GF I + D NCGG QW+ N
Sbjct: 1 MKLFSLLLIASLTALALGHGYIRNPAARNACKQYGFEECIIEWTMDEKNCGGLSAQWKDN 60
Query: 532 NGKCGICGDPYDDSPPRPHEL-GGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKLC 356
GKCG+CGD YD+ P+P + G + G I Y GQ+ + + IT H+G+ EF++
Sbjct: 61 GGKCGVCGDRYDN--PKPTLVYPGKFATGTITGIYKEGQLFELQLNITVSHKGWSEFRVG 118
Query: 355 TDPSNNEQECFEKYLLELEDGGTKY-YPKSSGRYDVRYRLPAGVSCEHCVLQWTYTAGNN 179
+ + +LL+LEDG T++ +P +G Y + +LPAG+ C HCVLQW + GN+
Sbjct: 119 DIGTPPITQAKLNHLLKLEDGTTRWMHPGKAGLYKIMLQLPAGLKCRHCVLQWWWRTGNS 178
Query: 178 WGVCPNGTGALGCGNQETFWACTDVSIKP 92
WG +G G LG G QE F C D++I P
Sbjct: 179 WGCDSDGCG-LGHGPQEHFVNCADITIIP 206
>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
Length = 295
Score = 129 bits (312), Expect = 2e-30
Identities = 72/194 (37%), Positives = 103/194 (53%), Gaps = 3/194 (1%)
Frame = -2
Query: 664 VRAHGRVVEPASRASXWRAGFGTRI-NYDDDGINCGGFHRQWETNNGKCGICGDPYDDSP 488
V HG ++EPA+R + + + NY+ + CGG Q N KCG+CGD Y +
Sbjct: 19 VHGHGYMIEPAARNACYMKFPNQCVRNYNANEQFCGGRATQI-ANGNKCGVCGDSYSNPS 77
Query: 487 PRPHELGGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKLCTDPSNNEQECFEKYLL 308
P PH G Y G I Y+ GQ+I + ITA H+G++E+++ + + LL
Sbjct: 78 P-PHVYPGKYATGFITQTYTQGQIISVKIHITANHQGWFEYRIGKIGTPPITQSKLTQLL 136
Query: 307 ELEDGGTKYYPKSSG-RYDVR-YRLPAGVSCEHCVLQWTYTAGNNWGVCPNGTGALGCGN 134
+G T++ SG Y+ + LPA ++C+HCV+QW + GN WG C NG G G
Sbjct: 137 ASAEGQTRFPLTGSGSSYETQTLVLPADLTCDHCVIQWWWKVGNTWG-CENGKCGNGLGP 195
Query: 133 QETFWACTDVSIKP 92
QETF C DV I P
Sbjct: 196 QETFVNCADVKILP 209
>SB_28578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 66.9 bits (156), Expect = 2e-11
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Frame = -2
Query: 703 LSYFLAFVALLATVRAHGRVVEPASRASXWRA-GFGTRINYDDDGINCGGFHRQWETNNG 527
LS+ L +++ V HG + EPA+R +R T +++ D +NCGGF Q + N G
Sbjct: 4 LSFTLLVASVVTLVSGHGFIQEPAARQVCYREFPKCTSVHWTPDELNCGGFSTQNDKNGG 63
Query: 526 KCGICGDPYDDSPPRPHELGGAYGNGVIVAKYSSGQ 419
KCG+CGD Y + G + GVI Y GQ
Sbjct: 64 KCGVCGDAY-HLTDKAFVYPGKFALGVITGTYQEGQ 98
>SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)
Length = 325
Score = 58.0 bits (134), Expect = 7e-09
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Frame = -2
Query: 691 LAFVALLATV---RAHGRV-VEPASRASXWRAGFGTRI-NYDDDGINCGGFHRQWETNNG 527
LAF LL + HG + + PA G + N+ + +NCGGF QW G
Sbjct: 5 LAFAVLLCVIPHISGHGYLSIPPARNYCGALKDKGPCVRNWTPNELNCGGFVYQWREAGG 64
Query: 526 KCGICGDPYDDSPPRPHELGGAYGNGVIVAK 434
KCG+CGDPY + + H GG + GVI +
Sbjct: 65 KCGVCGDPYGKT--QRHTEGGEFAKGVITGR 93
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 37.1 bits (82), Expect = 0.014
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 8/116 (6%)
Frame = -2
Query: 610 AGFGTRINYDDDGINCG-GFHRQWETNNGKCGICGDPYDDSPPRPHELGGAY-GNGVIV- 440
AGF I ++ D + G GF+ +W T + P PP P GGA+ G G +
Sbjct: 145 AGF-LWIEFNSDFSDTGTGFYARWRTEDDSGRPLPTPGVTKPPNPQGCGGAFSGQGGTIT 203
Query: 439 -----AKYSSGQVIDTTVEITAYHRGYWEFKLCTDPSNNEQECFEKYLLELEDGGT 287
+KY + T ITA G K T +++C Y LE+ DGG+
Sbjct: 204 SPGYPSKYPKNKKCVWT--ITAQEGGRIHLKFDTFQLEEDRQCRYDY-LEIRDGGS 256
>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
Length = 968
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +3
Query: 72 PDTEASTGLIETSVHAQNVS*FPHPRAPVPLGQTPQLLPAVYVHCRTQCSHETP 233
P T +T L+ +HA+ + + P P P P L Y+H T S TP
Sbjct: 402 PSTPKATRLVHPHLHAKYIHAYT-PSTPTPTRPVPPRLHTEYIHAYTP-STPTP 453
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +3
Query: 72 PDTEASTGLIETSVHAQNVS*FPHPRAPVPLGQTPQLLPAVYVHCRTQCSHETP 233
P T +T L+ +HA+ + + P P P P L Y+H T S TP
Sbjct: 585 PSTPKATRLVHPHLHAKYIHAYT-PSTPTPTRPVPPRLHTEYIHAYTP-STPTP 636
>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
Length = 1042
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 217 AHTRPPQEADTSRRNDHCSSGNTSCRHLLIPGGISRSIP 333
A+ PQ+A T + TSC+H+ +P G S+P
Sbjct: 474 AYQGSPQDAVTGAESFSRWWTGTSCKHVTLPAGALASVP 512
>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1169
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Frame = -2
Query: 238 PAGVSCEHCVLQWTYTAGNNWGVCPNGTGALG----CGNQETFWACTDVSIKPV 89
P G +C + W +CPNGT +LG C ++C + + PV
Sbjct: 280 PKGYACPRNDTDNMIKCPDGWALCPNGTYSLGAQIKCTPCLPGYSCPSIEMGPV 333
>SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1409
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = -2
Query: 232 GVSCEHCVLQWTYTAGNNWGVCPNGTGALGCGNQETFWA--CTDVSIKPVE 86
G +CE V + + N GVC N G C + F C KP+E
Sbjct: 310 GKNCEQDVNECSVNPCKNGGVCKNEHGGYSCACKAGFTGKNCEQAPSKPLE 360
>SB_41239| Best HMM Match : 7tm_6 (HMM E-Value=0.091)
Length = 581
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = -2
Query: 652 GRVVEPASRA---SXWR--AGFGTRINYDDDGINCGGFHRQWETNNGKCGICGDPYDDSP 488
G+V++P +R+ S W G+ + +D C F ++ + G P+ +P
Sbjct: 54 GKVIDPGNRSTVGSSWEHLEDLGSSVRFDP----CLTFINPTMNHHSSEELKGAPWGKTP 109
Query: 487 PRPHELGGAYG 455
P+ E GGA G
Sbjct: 110 PKTPEEGGANG 120
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 144 PRAPVPLGQTPQLLPAVYVHCRTQCSHETP 233
PR PVP TP++LPA Y R S TP
Sbjct: 523 PRTPVPAYFTPRVLPA-YTTPRVHHSPRTP 551
>SB_30331| Best HMM Match : Amidase (HMM E-Value=0)
Length = 555
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Frame = -2
Query: 568 NCGGFHRQWETNNGKCGICGDPYDDSPPRPHELGGAYGNGVIVAKYSS----GQVIDTTV 401
NC WET N G +PYD S G + G G I+A S G + ++
Sbjct: 195 NCSELCMWWETVNNVYGRTRNPYDTSRVAG---GSSGGEGAIIAAAGSLCGVGSDVGGSI 251
Query: 400 EITAYHRG 377
+ A+ G
Sbjct: 252 RMPAFFNG 259
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,118,324
Number of Sequences: 59808
Number of extensions: 593666
Number of successful extensions: 1718
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1706
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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