BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11h10r (716 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05) 155 3e-38 SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012) 153 1e-37 SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06) 129 2e-30 SB_28578| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 2e-11 SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7) 58 7e-09 SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014 SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10) 29 3.8 SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40) 28 6.6 SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6 SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6 SB_41239| Best HMM Match : 7tm_6 (HMM E-Value=0.091) 28 8.7 SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 28 8.7 SB_30331| Best HMM Match : Amidase (HMM E-Value=0) 28 8.7 >SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05) Length = 288 Score = 155 bits (376), Expect = 3e-38 Identities = 81/209 (38%), Positives = 115/209 (55%), Gaps = 3/209 (1%) Frame = -2 Query: 709 MQLSYFLAFVALLATVRAHGRVVEPASRASXWRAGFGT-RINYDDDGINCGGFHRQWETN 533 M+L L +L A HG + PA+R + GF Y D NCGG QW+ N Sbjct: 1 MKLFSLLLIASLTALALGHGYIKNPAARNVCRKYGFDKCPREYTPDEKNCGGIGTQWDKN 60 Query: 532 NGKCGICGDPYDDSPPRPHEL-GGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKLC 356 GKCG+CGD YD+ P+P + G + G I Y GQ+ + + IT H+G+ EF++ Sbjct: 61 GGKCGVCGDRYDN--PKPTLVYPGKFATGTITGIYKEGQLFELELHITVSHKGWSEFRVG 118 Query: 355 TDPSNNEQECFEKYLLELEDGGTKY-YPKSSGRYDVRYRLPAGVSCEHCVLQWTYTAGNN 179 + + +LL+LEDG T++ +P G Y + +LPAG+ C HCVLQW + GN+ Sbjct: 119 DIGAPPITQAKLNHLLKLEDGTTRWMHPGKIGLYKIMLQLPAGLKCRHCVLQWWWRTGNS 178 Query: 178 WGVCPNGTGALGCGNQETFWACTDVSIKP 92 WG +G G +G G QE F C D++IKP Sbjct: 179 WGCDSDGCG-MGHGPQEHFVNCADITIKP 206 >SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012) Length = 281 Score = 153 bits (372), Expect = 1e-37 Identities = 81/209 (38%), Positives = 117/209 (55%), Gaps = 3/209 (1%) Frame = -2 Query: 709 MQLSYFLAFVALLATVRAHGRVVEPASRASXWRAGFGTRI-NYDDDGINCGGFHRQWETN 533 M+L L +L A HG + PA+R + + GF I + D NCGG QW+ N Sbjct: 1 MKLFSLLLIASLTALALGHGYIRNPAARNACKQYGFEECIIEWTMDEKNCGGLSAQWKDN 60 Query: 532 NGKCGICGDPYDDSPPRPHEL-GGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKLC 356 GKCG+CGD YD+ P+P + G + G I Y GQ+ + + IT H+G+ EF++ Sbjct: 61 GGKCGVCGDRYDN--PKPTLVYPGKFATGTITGIYKEGQLFELQLNITVSHKGWSEFRVG 118 Query: 355 TDPSNNEQECFEKYLLELEDGGTKY-YPKSSGRYDVRYRLPAGVSCEHCVLQWTYTAGNN 179 + + +LL+LEDG T++ +P +G Y + +LPAG+ C HCVLQW + GN+ Sbjct: 119 DIGTPPITQAKLNHLLKLEDGTTRWMHPGKAGLYKIMLQLPAGLKCRHCVLQWWWRTGNS 178 Query: 178 WGVCPNGTGALGCGNQETFWACTDVSIKP 92 WG +G G LG G QE F C D++I P Sbjct: 179 WGCDSDGCG-LGHGPQEHFVNCADITIIP 206 >SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06) Length = 295 Score = 129 bits (312), Expect = 2e-30 Identities = 72/194 (37%), Positives = 103/194 (53%), Gaps = 3/194 (1%) Frame = -2 Query: 664 VRAHGRVVEPASRASXWRAGFGTRI-NYDDDGINCGGFHRQWETNNGKCGICGDPYDDSP 488 V HG ++EPA+R + + + NY+ + CGG Q N KCG+CGD Y + Sbjct: 19 VHGHGYMIEPAARNACYMKFPNQCVRNYNANEQFCGGRATQI-ANGNKCGVCGDSYSNPS 77 Query: 487 PRPHELGGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKLCTDPSNNEQECFEKYLL 308 P PH G Y G I Y+ GQ+I + ITA H+G++E+++ + + LL Sbjct: 78 P-PHVYPGKYATGFITQTYTQGQIISVKIHITANHQGWFEYRIGKIGTPPITQSKLTQLL 136 Query: 307 ELEDGGTKYYPKSSG-RYDVR-YRLPAGVSCEHCVLQWTYTAGNNWGVCPNGTGALGCGN 134 +G T++ SG Y+ + LPA ++C+HCV+QW + GN WG C NG G G Sbjct: 137 ASAEGQTRFPLTGSGSSYETQTLVLPADLTCDHCVIQWWWKVGNTWG-CENGKCGNGLGP 195 Query: 133 QETFWACTDVSIKP 92 QETF C DV I P Sbjct: 196 QETFVNCADVKILP 209 >SB_28578| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 103 Score = 66.9 bits (156), Expect = 2e-11 Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Frame = -2 Query: 703 LSYFLAFVALLATVRAHGRVVEPASRASXWRA-GFGTRINYDDDGINCGGFHRQWETNNG 527 LS+ L +++ V HG + EPA+R +R T +++ D +NCGGF Q + N G Sbjct: 4 LSFTLLVASVVTLVSGHGFIQEPAARQVCYREFPKCTSVHWTPDELNCGGFSTQNDKNGG 63 Query: 526 KCGICGDPYDDSPPRPHELGGAYGNGVIVAKYSSGQ 419 KCG+CGD Y + G + GVI Y GQ Sbjct: 64 KCGVCGDAY-HLTDKAFVYPGKFALGVITGTYQEGQ 98 >SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7) Length = 325 Score = 58.0 bits (134), Expect = 7e-09 Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 5/91 (5%) Frame = -2 Query: 691 LAFVALLATV---RAHGRV-VEPASRASXWRAGFGTRI-NYDDDGINCGGFHRQWETNNG 527 LAF LL + HG + + PA G + N+ + +NCGGF QW G Sbjct: 5 LAFAVLLCVIPHISGHGYLSIPPARNYCGALKDKGPCVRNWTPNELNCGGFVYQWREAGG 64 Query: 526 KCGICGDPYDDSPPRPHELGGAYGNGVIVAK 434 KCG+CGDPY + + H GG + GVI + Sbjct: 65 KCGVCGDPYGKT--QRHTEGGEFAKGVITGR 93 >SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1864 Score = 37.1 bits (82), Expect = 0.014 Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 8/116 (6%) Frame = -2 Query: 610 AGFGTRINYDDDGINCG-GFHRQWETNNGKCGICGDPYDDSPPRPHELGGAY-GNGVIV- 440 AGF I ++ D + G GF+ +W T + P PP P GGA+ G G + Sbjct: 145 AGF-LWIEFNSDFSDTGTGFYARWRTEDDSGRPLPTPGVTKPPNPQGCGGAFSGQGGTIT 203 Query: 439 -----AKYSSGQVIDTTVEITAYHRGYWEFKLCTDPSNNEQECFEKYLLELEDGGT 287 +KY + T ITA G K T +++C Y LE+ DGG+ Sbjct: 204 SPGYPSKYPKNKKCVWT--ITAQEGGRIHLKFDTFQLEEDRQCRYDY-LEIRDGGS 256 >SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10) Length = 968 Score = 29.1 bits (62), Expect = 3.8 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = +3 Query: 72 PDTEASTGLIETSVHAQNVS*FPHPRAPVPLGQTPQLLPAVYVHCRTQCSHETP 233 P T +T L+ +HA+ + + P P P P L Y+H T S TP Sbjct: 402 PSTPKATRLVHPHLHAKYIHAYT-PSTPTPTRPVPPRLHTEYIHAYTP-STPTP 453 Score = 29.1 bits (62), Expect = 3.8 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = +3 Query: 72 PDTEASTGLIETSVHAQNVS*FPHPRAPVPLGQTPQLLPAVYVHCRTQCSHETP 233 P T +T L+ +HA+ + + P P P P L Y+H T S TP Sbjct: 585 PSTPKATRLVHPHLHAKYIHAYT-PSTPTPTRPVPPRLHTEYIHAYTP-STPTP 636 >SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40) Length = 1042 Score = 28.3 bits (60), Expect = 6.6 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +1 Query: 217 AHTRPPQEADTSRRNDHCSSGNTSCRHLLIPGGISRSIP 333 A+ PQ+A T + TSC+H+ +P G S+P Sbjct: 474 AYQGSPQDAVTGAESFSRWWTGTSCKHVTLPAGALASVP 512 >SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1169 Score = 28.3 bits (60), Expect = 6.6 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%) Frame = -2 Query: 238 PAGVSCEHCVLQWTYTAGNNWGVCPNGTGALG----CGNQETFWACTDVSIKPV 89 P G +C + W +CPNGT +LG C ++C + + PV Sbjct: 280 PKGYACPRNDTDNMIKCPDGWALCPNGTYSLGAQIKCTPCLPGYSCPSIEMGPV 333 >SB_54839| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1409 Score = 28.3 bits (60), Expect = 6.6 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%) Frame = -2 Query: 232 GVSCEHCVLQWTYTAGNNWGVCPNGTGALGCGNQETFWA--CTDVSIKPVE 86 G +CE V + + N GVC N G C + F C KP+E Sbjct: 310 GKNCEQDVNECSVNPCKNGGVCKNEHGGYSCACKAGFTGKNCEQAPSKPLE 360 >SB_41239| Best HMM Match : 7tm_6 (HMM E-Value=0.091) Length = 581 Score = 27.9 bits (59), Expect = 8.7 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%) Frame = -2 Query: 652 GRVVEPASRA---SXWR--AGFGTRINYDDDGINCGGFHRQWETNNGKCGICGDPYDDSP 488 G+V++P +R+ S W G+ + +D C F ++ + G P+ +P Sbjct: 54 GKVIDPGNRSTVGSSWEHLEDLGSSVRFDP----CLTFINPTMNHHSSEELKGAPWGKTP 109 Query: 487 PRPHELGGAYG 455 P+ E GGA G Sbjct: 110 PKTPEEGGANG 120 >SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) Length = 797 Score = 27.9 bits (59), Expect = 8.7 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = +3 Query: 144 PRAPVPLGQTPQLLPAVYVHCRTQCSHETP 233 PR PVP TP++LPA Y R S TP Sbjct: 523 PRTPVPAYFTPRVLPA-YTTPRVHHSPRTP 551 >SB_30331| Best HMM Match : Amidase (HMM E-Value=0) Length = 555 Score = 27.9 bits (59), Expect = 8.7 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Frame = -2 Query: 568 NCGGFHRQWETNNGKCGICGDPYDDSPPRPHELGGAYGNGVIVAKYSS----GQVIDTTV 401 NC WET N G +PYD S G + G G I+A S G + ++ Sbjct: 195 NCSELCMWWETVNNVYGRTRNPYDTSRVAG---GSSGGEGAIIAAAGSLCGVGSDVGGSI 251 Query: 400 EITAYHRG 377 + A+ G Sbjct: 252 RMPAFFNG 259 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,118,324 Number of Sequences: 59808 Number of extensions: 593666 Number of successful extensions: 1718 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1494 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1706 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1901817086 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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