Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h10r
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    28   7.7  
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    28   7.7  
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    28   7.7  
AF016688-3|AAB66076.2|  674|Caenorhabditis elegans Hypothetical ...    28   7.7  

>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
           protein F10F2.1 protein.
          Length = 2507

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 265 GRYDVRYRLPAGVSCEHCVLQWTYTAGNNWGVCPNGTGALGCGN 134
           GR D++  +  G   E   L W  T+  NW  C  G  A G  N
Sbjct: 411 GRSDIKCFID-GQLAETIELSWVVTSATNWDRCSIGVSADGTAN 453


>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical
           protein F10F2.1 protein.
          Length = 2507

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -2

Query: 265 GRYDVRYRLPAGVSCEHCVLQWTYTAGNNWGVCPNGTGALGCGN 134
           GR D++  +  G   E   L W  T+  NW  C  G  A G  N
Sbjct: 411 GRSDIKCFID-GQLAETIELSWVVTSATNWDRCSIGVSADGTAN 453


>U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical
           protein B0336.6 protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = -2

Query: 508 DPYDDSPPRPHELGGAYGNGVIVAK---YSSGQ 419
           D  DD PP P  +GG+   GV   +   YSS Q
Sbjct: 365 DDMDDLPPPPESVGGSSAYGVFAGRTESYSSSQ 397


>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -2

Query: 187 GNNWGVCPNGTGALGCGNQETFWACTDVSIKPVEASVSGMSLPI 56
           G++  V P G+  +  G++ET   C  +S++ + A  +G + P+
Sbjct: 794 GSDSAVSPTGSSQISSGDEET-KKCKSLSLEQISARANGNNSPM 836


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -2

Query: 187 GNNWGVCPNGTGALGCGNQETFWACTDVSIKPVEASVSGMSLPI 56
           G++  V P G+  +  G++ET   C  +S++ + A  +G + P+
Sbjct: 816 GSDSAVSPTGSSQISSGDEET-KKCKSLSLEQISARANGNNSPM 858


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -2

Query: 187 GNNWGVCPNGTGALGCGNQETFWACTDVSIKPVEASVSGMSLPI 56
           G++  V P G+  +  G++ET   C  +S++ + A  +G + P+
Sbjct: 816 GSDSAVSPTGSSQISSGDEET-KKCKSLSLEQISARANGNNSPM 858


>AF016688-3|AAB66076.2|  674|Caenorhabditis elegans Hypothetical
           protein F18A12.4 protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -2

Query: 592 INYDDDGINCGGFHRQWETNNGKCGIC-GDPYD--DSPPRPHELGGAYGNGVIVAKYSSG 422
           + YD++G    G   +  T  GK G C  D YD  D P    ++ G +    I+A +   
Sbjct: 528 LGYDENGKPMDGIRLEHVTEYGKQGQCLVDQYDNYDDPVYGKKMNGTHSINEIIADWVGH 587

Query: 421 QV 416
           +V
Sbjct: 588 EV 589


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,053,046
Number of Sequences: 27780
Number of extensions: 418440
Number of successful extensions: 1337
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)