Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h10r
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.9  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   2.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 173 TPVVTGCVRPL*DAMLTRDPRRKPIPHVVTTTALRVI 283
           TP  T   + L  A + R+ RR P PH  T    RV+
Sbjct: 161 TPTPTTVQQLLRRAQIRRNERRTPDPHDETAKKPRVL 197


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 696 ISLHSLPCWRLFVHTAGWWSPHLELRPGVP 607
           +SLH    WR F + A   +P+ +   G P
Sbjct: 301 LSLHGQLLWREFFYCAATKNPNFDRMQGNP 330


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +1

Query: 262 DHCSSGNTSCRHLL-IPGGISRSIPVRYCWGRC 357
           D C +  T   H L  PG + + IP   C GRC
Sbjct: 27  DECQA--TPVIHFLQYPGCVPKPIPSYACRGRC 57


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = -2

Query: 208 LQWTYTAGNNWGVCPNGTGALGCGNQET 125
           L+W    G  WG  P+    +   N +T
Sbjct: 283 LKWLVNWGEQWGFLPSKDSLVFVDNHDT 310


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 608 GTPGRSSRCGLHHPAVCTNSRQQGN 682
           G  G +S   +H P V TNS    N
Sbjct: 490 GYDGAASTAVIHEPVVETNSSPSPN 514


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,735
Number of Sequences: 438
Number of extensions: 5211
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)