Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h10r
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65510.1 68414.m07433 expressed protein                             34   0.11 
At4g35540.1 68417.m05051 expressed protein transcription factor ...    29   2.3  
At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ...    29   3.1  
At4g11050.1 68417.m01796 endo-1,4-beta-glucanase, putative / cel...    28   7.1  
At4g08097.1 68417.m01316 hypothetical protein                          28   7.1  

>At1g65510.1 68414.m07433 expressed protein
          Length = 80

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -2

Query: 703 LSYFLAFVALLATVRAHGRVVEPASRASXWRAGFGTRINYDDDGINCGGFHRQWETNNGK 524
           ++  L+ + L+ T+ +  +VVE  SR    +   G  I +     +CG  H  W+ NNG 
Sbjct: 10  VALLLSLLILIFTLSSQVKVVEATSR----KLANGRPIVWTPASRSCGASHASWKKNNGP 65

Query: 523 C 521
           C
Sbjct: 66  C 66


>At4g35540.1 68417.m05051 expressed protein transcription factor
           IIIB chain BRF1, Saccharomycescerevisiae, PIR2:A44072
          Length = 527

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -2

Query: 568 NCGGFHRQWETNNGKCGICGD--PYDDSPPRPHELGGAYGNGVIVAKYSSGQVID 410
           N   F R  +T N  CG CG    YD+   +   + G  G  + V     G V+D
Sbjct: 7   NGSNFERDEDTGNSYCGGCGTLREYDNYEAQLGGIRGPQGTYIRVGTIGRGSVLD 61


>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1006

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
 Frame = -2

Query: 481 PHELGGAYGNGVIVAKYSSGQVIDT--TVEITAYHRGYWEFKLCTDPSNNEQECFEKYLL 308
           P   G A GN   +    S  +  T  T  +   + GY  ++  +DP N     +  Y  
Sbjct: 68  PQPTGPATGNVQEIPNTVSFTISSTSGTANVAQDYSGYTPYQTSSDPHNYSNTGYSNYYS 127

Query: 307 ELEDGGTKYYPKSSGRY 257
             +   ++ YP+  G Y
Sbjct: 128 GYQQQPSQSYPQPVGAY 144


>At4g11050.1 68417.m01796 endo-1,4-beta-glucanase, putative /
           cellulase, putative similar to endo-beta-1,4-glucanase
           GI:4972236 from [Fragaria x ananassa]
          Length = 626

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 561 PQLMPSSS*LILVPKPARQXEARDAGSTTLPCARTVANKATNARKYDNCIF 713
           P + P+ S +I+ P P  Q +     + + P   T++ K TN+ K +  ++
Sbjct: 501 PGVSPTPSPVIIKPAPVPQRKPTKPPAASSPSPITISQKMTNSWKNEGKVY 551


>At4g08097.1 68417.m01316 hypothetical protein
          Length = 346

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 448 VIVAKYSSGQVIDTTVEITAYHRGYWEFKLCTDPSN 341
           V+V K +S +   + V++TA+   YW FK  TD  N
Sbjct: 155 VVVIKLNSTKCKPSMVDMTAFRMNYWVFK--TDSVN 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,245,940
Number of Sequences: 28952
Number of extensions: 405675
Number of successful extensions: 1182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)