Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h10f
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    26   3.4  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    25   7.8  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    25   7.8  

>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 1   DSQRVKLLR*FVISSVFKFQHKT*EICSCHISLHSL 108
           D++R+K L+ F     F+F  +  + CSC +SL S+
Sbjct: 92  DAERIKSLQSF--EKDFQFSKEKFKPCSCQVSLSSV 125


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 96  LAFVALLATVRAHGRVVEPASRASAWRAGFGTRINYDDDG 215
           +AF+  + T +  GRVV        W A F +   +D+ G
Sbjct: 508 VAFLIFIYTAKTSGRVVTDGGINRGWWAAFTSSSLFDNLG 547


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 120 TVRAHGRVVEPASRASA 170
           +  AHG  +EPAS+ASA
Sbjct: 241 SANAHGLGIEPASKASA 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,215
Number of Sequences: 5004
Number of extensions: 38751
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)