Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h10f
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0460 - 23118221-23118406,23118417-23118671,23118763-231188... 30 0.85
04_03_1029 - 21835441-21835856,21836666-21836852 30 1.1
12_02_0160 + 14585559-14586230 29 2.6
01_05_0489 + 22652479-22653718,22653882-22654063,22654172-226542... 29 2.6
11_01_0385 + 2915532-2916482 28 3.4
05_01_0258 + 1984666-1984878,1985019-1985852 28 4.5
03_06_0058 - 31330067-31330978 28 4.5
01_01_0079 - 603019-603129,603302-603367,603489-603554,603681-60... 28 4.5
12_01_0961 + 9566730-9566998,9567096-9567187,9567294-9567427,956... 27 7.9
09_04_0445 - 17677126-17677512,17677608-17678564 27 7.9
06_03_0272 + 19053455-19053587,19054665-19056627,19056827-190568... 27 7.9
02_04_0489 + 23404757-23404812,23406170-23406296,23406418-234064... 27 7.9
>02_04_0460 -
23118221-23118406,23118417-23118671,23118763-23118851,
23119527-23119605,23121317-23121484,23121760-23122137
Length = 384
Score = 30.3 bits (65), Expect = 0.85
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 76 ICSCHISLHSLPCWRLFVHTAGW 144
I CH+ L SLPCW ++ + G+
Sbjct: 310 IRKCHLQLSSLPCWNVYSNYHGY 332
>04_03_1029 - 21835441-21835856,21836666-21836852
Length = 200
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 322 PPNSCGRGGESSYGSPQMPHFPLLVSH*RWKPPQLMP 212
P CGR E +G P+ P L +W+ P+L P
Sbjct: 97 PREECGRRDEGPHGPPRAPLPDLHRGREQWRAPRLRP 133
>12_02_0160 + 14585559-14586230
Length = 223
Score = 28.7 bits (61), Expect = 2.6
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = +3
Query: 99 AFVALLATVRAHGRVVEPASRA---SAWRAGFGTRINYDDDGINCGGFHRQWETNNGKCG 269
A + A+ R G E A R WR G + DG R+W+ G+ G
Sbjct: 46 AATGVAASPRGGGVAAETARRRRRRQRWRGGRRGEVETTGDG-------RRWQ---GRGG 95
Query: 270 ICGDPYDDSPPRPHELG 320
G D+PP P ELG
Sbjct: 96 AAGAQDLDAPPMPRELG 112
>01_05_0489 +
22652479-22653718,22653882-22654063,22654172-22654279,
22654364-22654467,22654570-22654657,22654760-22654870,
22654955-22655020,22656740-22656799,22656869-22657411,
22657646-22657765,22657845-22657964,22659083-22659136,
22659236-22659331,22660580-22660681
Length = 997
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 65 KHEKYAVVIFPCIRCLVGDCSCTRQG 142
++EK V+FPC+ ++ DC R+G
Sbjct: 795 RNEKTEEVVFPCVLKIIPDCVFNRKG 820
>11_01_0385 + 2915532-2916482
Length = 316
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 174 ARPKLEMRAPPPCRVHEQSPTRQRMQG 94
++ K E RAPPP + HE++P + + G
Sbjct: 102 SKHKDEERAPPPKKHHEKAPPKSKHHG 128
>05_01_0258 + 1984666-1984878,1985019-1985852
Length = 348
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +3
Query: 93 FLAFVALLATVRAHGRVVEPASRASAWRAGFG 188
F A ALL A G VVE A A+ W FG
Sbjct: 286 FHADWALLTGKEARGHVVEYAKNATLWNVDFG 317
>03_06_0058 - 31330067-31330978
Length = 303
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 190 VPKPARQAEARDAGSTTLPCARTVANKATNAR 95
VP P+RQA +G+TT P + V +AR
Sbjct: 79 VPPPSRQAVTGQSGTTTAPSGQCVGIALQSAR 110
>01_01_0079 -
603019-603129,603302-603367,603489-603554,603681-603824,
603932-604429
Length = 294
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 285 YDDSPPRPHELGGAYGNGV 341
YDD P P E+ G +GNGV
Sbjct: 20 YDDEPSMPLEILGYHGNGV 38
>12_01_0961 +
9566730-9566998,9567096-9567187,9567294-9567427,
9567542-9567591,9569026-9569100,9569179-9569734
Length = 391
Score = 27.1 bits (57), Expect = 7.9
Identities = 20/86 (23%), Positives = 32/86 (37%)
Frame = -1
Query: 349 ATMTPLP*APPNSCGRGGESSYGSPQMPHFPLLVSH*RWKPPQLMPSSS*LILVPKPARQ 170
A +P P + P S P F + W L+ ++ L++ P R+
Sbjct: 8 AAESPNPRSAPRRAAAAAAKDASSFLSPRFRSAAAQAGWDEESLLHAA--LVVEDTPVRE 65
Query: 169 AEARDAGSTTLPCARTVANKATNARK 92
+ R STT A + +N RK
Sbjct: 66 SRRRRRASTTSSSAGGGGSAGSNTRK 91
>09_04_0445 - 17677126-17677512,17677608-17678564
Length = 447
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 130 HTAGWWSPHLELRPGVP 180
H WW PH E PG P
Sbjct: 379 HEGSWWDPHGEPCPGSP 395
>06_03_0272 +
19053455-19053587,19054665-19056627,19056827-19056887,
19056975-19057198,19057573-19057642,19058453-19058515
Length = 837
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 177 HARPKLEMRAPPPCRVHEQSPTRQRMQG 94
H P L +++P +VH PTRQ + G
Sbjct: 269 HHSPSLNVQSPNIPQVHAPLPTRQNLHG 296
>02_04_0489 +
23404757-23404812,23406170-23406296,23406418-23406487,
23406997-23407102,23407185-23407296,23407792-23407914,
23408017-23408176,23408300-23408376,23408474-23408526,
23408700-23408754,23409049-23409683,23410412-23410733,
23410838-23411146,23411468-23411470
Length = 735
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 222 CGGFHRQWETNNGKCGICGDPYDDSPPRPHELG 320
CGG H+Q E +G G+ D PP G
Sbjct: 556 CGGRHQQREVTSGGAGVEHGSIGDVPPSIRRAG 588
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,458,779
Number of Sequences: 37544
Number of extensions: 332519
Number of successful extensions: 1092
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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