BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11h10f (481 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05) 86 2e-17 SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012) 85 2e-17 SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06) 77 6e-15 SB_28578| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 5e-12 SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7) 58 3e-09 SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.37 SB_41239| Best HMM Match : 7tm_6 (HMM E-Value=0.091) 28 3.5 SB_30331| Best HMM Match : Amidase (HMM E-Value=0) 28 4.6 SB_2154| Best HMM Match : LRR_1 (HMM E-Value=4.9e-06) 27 8.0 SB_54800| Best HMM Match : zf-A20 (HMM E-Value=6.6) 27 8.0 SB_43499| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0 >SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05) Length = 288 Score = 85.8 bits (203), Expect = 2e-17 Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 2/119 (1%) Frame = +3 Query: 78 MQLSYFLAFVALLATVRAHGRVVEPASRASAWRAGFGT-RINYDDDGINCGGFHRQWETN 254 M+L L +L A HG + PA+R + GF Y D NCGG QW+ N Sbjct: 1 MKLFSLLLIASLTALALGHGYIKNPAARNVCRKYGFDKCPREYTPDEKNCGGIGTQWDKN 60 Query: 255 NGKCGICGDPYDDSPPRPHEL-GGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKL 428 GKCG+CGD YD+ P+P + G + G I Y GQ+ + + IT H+G+ EF++ Sbjct: 61 GGKCGVCGDRYDN--PKPTLVYPGKFATGTITGIYKEGQLFELELHITVSHKGWSEFRV 117 >SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012) Length = 281 Score = 85.4 bits (202), Expect = 2e-17 Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Frame = +3 Query: 78 MQLSYFLAFVALLATVRAHGRVVEPASRASAWRAGFGTRI-NYDDDGINCGGFHRQWETN 254 M+L L +L A HG + PA+R + + GF I + D NCGG QW+ N Sbjct: 1 MKLFSLLLIASLTALALGHGYIRNPAARNACKQYGFEECIIEWTMDEKNCGGLSAQWKDN 60 Query: 255 NGKCGICGDPYDDSPPRPHEL-GGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKL 428 GKCG+CGD YD+ P+P + G + G I Y GQ+ + + IT H+G+ EF++ Sbjct: 61 GGKCGVCGDRYDN--PKPTLVYPGKFATGTITGIYKEGQLFELQLNITVSHKGWSEFRV 117 >SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06) Length = 295 Score = 77.4 bits (182), Expect = 6e-15 Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 1/103 (0%) Frame = +3 Query: 123 VRAHGRVVEPASRASAWRAGFGTRI-NYDDDGINCGGFHRQWETNNGKCGICGDPYDDSP 299 V HG ++EPA+R + + + NY+ + CGG Q N KCG+CGD Y + Sbjct: 19 VHGHGYMIEPAARNACYMKFPNQCVRNYNANEQFCGGRATQI-ANGNKCGVCGDSYSNPS 77 Query: 300 PRPHELGGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKL 428 P PH G Y G I Y+ GQ+I + ITA H+G++E+++ Sbjct: 78 P-PHVYPGKYATGFITQTYTQGQIISVKIHITANHQGWFEYRI 119 >SB_28578| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 103 Score = 67.7 bits (158), Expect = 5e-12 Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Frame = +3 Query: 84 LSYFLAFVALLATVRAHGRVVEPASRASAWRA-GFGTRINYDDDGINCGGFHRQWETNNG 260 LS+ L +++ V HG + EPA+R +R T +++ D +NCGGF Q + N G Sbjct: 4 LSFTLLVASVVTLVSGHGFIQEPAARQVCYREFPKCTSVHWTPDELNCGGFSTQNDKNGG 63 Query: 261 KCGICGDPYDDSPPRPHELGGAYGNGVIVAKYSSGQ 368 KCG+CGD Y + G + GVI Y GQ Sbjct: 64 KCGVCGDAY-HLTDKAFVYPGKFALGVITGTYQEGQ 98 >SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7) Length = 325 Score = 58.4 bits (135), Expect = 3e-09 Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 5/91 (5%) Frame = +3 Query: 96 LAFVALLATV---RAHGRVVEPASR--ASAWRAGFGTRINYDDDGINCGGFHRQWETNNG 260 LAF LL + HG + P +R A + N+ + +NCGGF QW G Sbjct: 5 LAFAVLLCVIPHISGHGYLSIPPARNYCGALKDKGPCVRNWTPNELNCGGFVYQWREAGG 64 Query: 261 KCGICGDPYDDSPPRPHELGGAYGNGVIVAK 353 KCG+CGDPY + + H GG + GVI + Sbjct: 65 KCGVCGDPYGKT--QRHTEGGEFAKGVITGR 93 >SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1864 Score = 31.5 bits (68), Expect = 0.37 Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 8/117 (6%) Frame = +3 Query: 150 PASRASAWRAGFGTRINYDDDGINCG-GFHRQWETNNGKCGICGDPYDDSPPRPHELGGA 326 PA+ S+ AGF I ++ D + G GF+ +W T + P PP P GGA Sbjct: 138 PATVTSS--AGF-LWIEFNSDFSDTGTGFYARWRTEDDSGRPLPTPGVTKPPNPQGCGGA 194 Query: 327 Y-GNGVIV------AKYSSGQVIDTTVEITAYHRGYWEFKLCTDPSNNEQECFEKYL 476 + G G + +KY + T ITA G K T +++C YL Sbjct: 195 FSGQGGTITSPGYPSKYPKNKKCVWT--ITAQEGGRIHLKFDTFQLEEDRQCRYDYL 249 >SB_41239| Best HMM Match : 7tm_6 (HMM E-Value=0.091) Length = 581 Score = 28.3 bits (60), Expect = 3.5 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Frame = +3 Query: 135 GRVVEPASRA---SAWR--AGFGTRINYDDDGINCGGFHRQWETNNGKCGICGDPYDDSP 299 G+V++P +R+ S+W G+ + +D C F ++ + G P+ +P Sbjct: 54 GKVIDPGNRSTVGSSWEHLEDLGSSVRFDP----CLTFINPTMNHHSSEELKGAPWGKTP 109 Query: 300 PRPHELGGAYG 332 P+ E GGA G Sbjct: 110 PKTPEEGGANG 120 >SB_30331| Best HMM Match : Amidase (HMM E-Value=0) Length = 555 Score = 27.9 bits (59), Expect = 4.6 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Frame = +3 Query: 219 NCGGFHRQWETNNGKCGICGDPYDDSPPRPHELGGAYGNGVIVAKYSS----GQVIDTTV 386 NC WET N G +PYD S G + G G I+A S G + ++ Sbjct: 195 NCSELCMWWETVNNVYGRTRNPYDTSRVAG---GSSGGEGAIIAAAGSLCGVGSDVGGSI 251 Query: 387 EITAYHRG 410 + A+ G Sbjct: 252 RMPAFFNG 259 >SB_2154| Best HMM Match : LRR_1 (HMM E-Value=4.9e-06) Length = 150 Score = 27.1 bits (57), Expect = 8.0 Identities = 10/26 (38%), Positives = 13/26 (50%) Frame = +2 Query: 95 PCIRCLVGDCSCTRQGGGARISSFGL 172 PC R VG C+C + G + GL Sbjct: 12 PCPRPAVGTCTCVQTGSYTNVKCLGL 37 >SB_54800| Best HMM Match : zf-A20 (HMM E-Value=6.6) Length = 86 Score = 27.1 bits (57), Expect = 8.0 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +3 Query: 324 AYGNGVIVAKYSSGQVIDTTVEITAYH 404 A+GNG+ VAK S GQ V + A H Sbjct: 44 AWGNGLRVAKTSKGQKPGCPVHVPAQH 70 >SB_43499| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 356 Score = 27.1 bits (57), Expect = 8.0 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +3 Query: 324 AYGNGVIVAKYSSGQVIDTTVEITAYH 404 A+GNG+ VAK S GQ V + A H Sbjct: 314 AWGNGLRVAKTSKGQKPGCPVHVPAQH 340 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,955,871 Number of Sequences: 59808 Number of extensions: 333863 Number of successful extensions: 822 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 752 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 815 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1001731762 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -