Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h10f
         (481 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)         86   2e-17
SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)         85   2e-17
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)          77   6e-15
SB_28578| Best HMM Match : No HMM Matches (HMM E-Value=.)              68   5e-12
SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)              58   3e-09
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.37 
SB_41239| Best HMM Match : 7tm_6 (HMM E-Value=0.091)                   28   3.5  
SB_30331| Best HMM Match : Amidase (HMM E-Value=0)                     28   4.6  
SB_2154| Best HMM Match : LRR_1 (HMM E-Value=4.9e-06)                  27   8.0  
SB_54800| Best HMM Match : zf-A20 (HMM E-Value=6.6)                    27   8.0  
SB_43499| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)
          Length = 288

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
 Frame = +3

Query: 78  MQLSYFLAFVALLATVRAHGRVVEPASRASAWRAGFGT-RINYDDDGINCGGFHRQWETN 254
           M+L   L   +L A    HG +  PA+R    + GF      Y  D  NCGG   QW+ N
Sbjct: 1   MKLFSLLLIASLTALALGHGYIKNPAARNVCRKYGFDKCPREYTPDEKNCGGIGTQWDKN 60

Query: 255 NGKCGICGDPYDDSPPRPHEL-GGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKL 428
            GKCG+CGD YD+  P+P  +  G +  G I   Y  GQ+ +  + IT  H+G+ EF++
Sbjct: 61  GGKCGVCGDRYDN--PKPTLVYPGKFATGTITGIYKEGQLFELELHITVSHKGWSEFRV 117


>SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)
          Length = 281

 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
 Frame = +3

Query: 78  MQLSYFLAFVALLATVRAHGRVVEPASRASAWRAGFGTRI-NYDDDGINCGGFHRQWETN 254
           M+L   L   +L A    HG +  PA+R +  + GF   I  +  D  NCGG   QW+ N
Sbjct: 1   MKLFSLLLIASLTALALGHGYIRNPAARNACKQYGFEECIIEWTMDEKNCGGLSAQWKDN 60

Query: 255 NGKCGICGDPYDDSPPRPHEL-GGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKL 428
            GKCG+CGD YD+  P+P  +  G +  G I   Y  GQ+ +  + IT  H+G+ EF++
Sbjct: 61  GGKCGVCGDRYDN--PKPTLVYPGKFATGTITGIYKEGQLFELQLNITVSHKGWSEFRV 117


>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
          Length = 295

 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
 Frame = +3

Query: 123 VRAHGRVVEPASRASAWRAGFGTRI-NYDDDGINCGGFHRQWETNNGKCGICGDPYDDSP 299
           V  HG ++EPA+R + +       + NY+ +   CGG   Q   N  KCG+CGD Y +  
Sbjct: 19  VHGHGYMIEPAARNACYMKFPNQCVRNYNANEQFCGGRATQI-ANGNKCGVCGDSYSNPS 77

Query: 300 PRPHELGGAYGNGVIVAKYSSGQVIDTTVEITAYHRGYWEFKL 428
           P PH   G Y  G I   Y+ GQ+I   + ITA H+G++E+++
Sbjct: 78  P-PHVYPGKYATGFITQTYTQGQIISVKIHITANHQGWFEYRI 119


>SB_28578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
 Frame = +3

Query: 84  LSYFLAFVALLATVRAHGRVVEPASRASAWRA-GFGTRINYDDDGINCGGFHRQWETNNG 260
           LS+ L   +++  V  HG + EPA+R   +R     T +++  D +NCGGF  Q + N G
Sbjct: 4   LSFTLLVASVVTLVSGHGFIQEPAARQVCYREFPKCTSVHWTPDELNCGGFSTQNDKNGG 63

Query: 261 KCGICGDPYDDSPPRPHELGGAYGNGVIVAKYSSGQ 368
           KCG+CGD Y     +     G +  GVI   Y  GQ
Sbjct: 64  KCGVCGDAY-HLTDKAFVYPGKFALGVITGTYQEGQ 98


>SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)
          Length = 325

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
 Frame = +3

Query: 96  LAFVALLATV---RAHGRVVEPASR--ASAWRAGFGTRINYDDDGINCGGFHRQWETNNG 260
           LAF  LL  +     HG +  P +R    A +       N+  + +NCGGF  QW    G
Sbjct: 5   LAFAVLLCVIPHISGHGYLSIPPARNYCGALKDKGPCVRNWTPNELNCGGFVYQWREAGG 64

Query: 261 KCGICGDPYDDSPPRPHELGGAYGNGVIVAK 353
           KCG+CGDPY  +  + H  GG +  GVI  +
Sbjct: 65  KCGVCGDPYGKT--QRHTEGGEFAKGVITGR 93


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
 Frame = +3

Query: 150 PASRASAWRAGFGTRINYDDDGINCG-GFHRQWETNNGKCGICGDPYDDSPPRPHELGGA 326
           PA+  S+  AGF   I ++ D  + G GF+ +W T +        P    PP P   GGA
Sbjct: 138 PATVTSS--AGF-LWIEFNSDFSDTGTGFYARWRTEDDSGRPLPTPGVTKPPNPQGCGGA 194

Query: 327 Y-GNGVIV------AKYSSGQVIDTTVEITAYHRGYWEFKLCTDPSNNEQECFEKYL 476
           + G G  +      +KY   +    T  ITA   G    K  T     +++C   YL
Sbjct: 195 FSGQGGTITSPGYPSKYPKNKKCVWT--ITAQEGGRIHLKFDTFQLEEDRQCRYDYL 249


>SB_41239| Best HMM Match : 7tm_6 (HMM E-Value=0.091)
          Length = 581

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = +3

Query: 135 GRVVEPASRA---SAWR--AGFGTRINYDDDGINCGGFHRQWETNNGKCGICGDPYDDSP 299
           G+V++P +R+   S+W      G+ + +D     C  F      ++    + G P+  +P
Sbjct: 54  GKVIDPGNRSTVGSSWEHLEDLGSSVRFDP----CLTFINPTMNHHSSEELKGAPWGKTP 109

Query: 300 PRPHELGGAYG 332
           P+  E GGA G
Sbjct: 110 PKTPEEGGANG 120


>SB_30331| Best HMM Match : Amidase (HMM E-Value=0)
          Length = 555

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
 Frame = +3

Query: 219 NCGGFHRQWETNNGKCGICGDPYDDSPPRPHELGGAYGNGVIVAKYSS----GQVIDTTV 386
           NC      WET N   G   +PYD S       G + G G I+A   S    G  +  ++
Sbjct: 195 NCSELCMWWETVNNVYGRTRNPYDTSRVAG---GSSGGEGAIIAAAGSLCGVGSDVGGSI 251

Query: 387 EITAYHRG 410
            + A+  G
Sbjct: 252 RMPAFFNG 259


>SB_2154| Best HMM Match : LRR_1 (HMM E-Value=4.9e-06)
          Length = 150

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 95  PCIRCLVGDCSCTRQGGGARISSFGL 172
           PC R  VG C+C + G    +   GL
Sbjct: 12  PCPRPAVGTCTCVQTGSYTNVKCLGL 37


>SB_54800| Best HMM Match : zf-A20 (HMM E-Value=6.6)
          Length = 86

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 324 AYGNGVIVAKYSSGQVIDTTVEITAYH 404
           A+GNG+ VAK S GQ     V + A H
Sbjct: 44  AWGNGLRVAKTSKGQKPGCPVHVPAQH 70


>SB_43499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 324 AYGNGVIVAKYSSGQVIDTTVEITAYH 404
           A+GNG+ VAK S GQ     V + A H
Sbjct: 314 AWGNGLRVAKTSKGQKPGCPVHVPAQH 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,955,871
Number of Sequences: 59808
Number of extensions: 333863
Number of successful extensions: 822
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)