SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h10f
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z19156-1|CAA79563.1|  160|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical ...    28   4.0  
AF016688-3|AAB66076.2|  674|Caenorhabditis elegans Hypothetical ...    28   4.0  
Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U55366-2|AAA97981.1|  156|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribo...    27   7.0  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    27   7.0  
AC024200-15|AAF36011.1|  945|Caenorhabditis elegans Poly(adp-rib...    27   7.0  
Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z71258-3|CAA95778.1|  187|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fb...    27   9.3  
AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protei...    27   9.3  

>U32305-1|AAK18854.2|  469|Caenorhabditis elegans Hypothetical
           protein B0336.6 protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = +3

Query: 279 DPYDDSPPRPHELGGAYGNGVIVAK---YSSGQ 368
           D  DD PP P  +GG+   GV   +   YSS Q
Sbjct: 365 DDMDDLPPPPESVGGSSAYGVFAGRTESYSSSQ 397


>U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical
           protein C18H9.8 protein.
          Length = 674

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 174 ARPKLEMRAPPPCRVHEQSPT 112
           ARP   MRAPPP   +E  PT
Sbjct: 73  ARPPSAMRAPPPQPTYENRPT 93


>Z19156-1|CAA79563.1|  160|Caenorhabditis elegans Hypothetical
           protein T02C1.1 protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 144 PPCRVHEQSPTRQRMQGNMTTAYFSCFVLKFENTRYYE 31
           P CR H  +P R R   ++T +Y S    +  +T YYE
Sbjct: 43  PLCRAHTGNPIRNRQLESLTMSYVSS---RNISTEYYE 77


>AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical
           protein F58D5.1 protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 19/73 (26%), Positives = 27/73 (36%)
 Frame = +3

Query: 147 EPASRASAWRAGFGTRINYDDDGINCGGFHRQWETNNGKCGICGDPYDDSPPRPHELGGA 326
           +P  R   +    G   N+   G   GG   QW  N G  G   + +++    P   GG 
Sbjct: 454 KPVMRGRGFGGAGGGAGNHGQRGGQRGG--GQWGGNAGPGGYYPNHFNNGYDMPMPWGGG 511

Query: 327 YGNGVIVAKYSSG 365
           YG  +    Y  G
Sbjct: 512 YGGDMGYGAYGGG 524


>AF016688-3|AAB66076.2|  674|Caenorhabditis elegans Hypothetical
           protein F18A12.4 protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +3

Query: 195 INYDDDGINCGGFHRQWETNNGKCGIC-GDPYD--DSPPRPHELGGAYGNGVIVAKYSSG 365
           + YD++G    G   +  T  GK G C  D YD  D P    ++ G +    I+A +   
Sbjct: 528 LGYDENGKPMDGIRLEHVTEYGKQGQCLVDQYDNYDDPVYGKKMNGTHSINEIIADWVGH 587

Query: 366 QV 371
           +V
Sbjct: 588 EV 589


>Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical
           protein C53B4.5 protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -1

Query: 337 PLP*APPNSCGRGGESSYGSPQMPHFP 257
           P P  PP   GR GE   GSP  P  P
Sbjct: 188 PGPAGPPGENGRNGEPQPGSPGEPGRP 214


>U55366-2|AAA97981.1|  156|Caenorhabditis elegans Hypothetical
           protein F41F3.3 protein.
          Length = 156

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 331 P*APPNSCGRGGESSYGSPQMPHFPL 254
           P  PP+ CG GG      PQ+P   L
Sbjct: 32  PPPPPSPCGCGGGGGLALPQLPPLSL 57


>AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-1 protein.
          Length = 945

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 249 TNNGKCGICGDPYDDSPPRPHELGGA 326
           +N GKCG CG  ++    + H  G A
Sbjct: 124 SNRGKCGKCGQNFERGEIKAHNKGKA 149


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 322 PPNSCGRGGESSYGSPQMPHF 260
           PP    RGG   +G P  PHF
Sbjct: 782 PPPPSFRGGRGGHGGPPPPHF 802


>AC024200-15|AAF36011.1|  945|Caenorhabditis elegans
           Poly(adp-ribose) metabolism enzymeprotein 1 protein.
          Length = 945

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 249 TNNGKCGICGDPYDDSPPRPHELGGA 326
           +N GKCG CG  ++    + H  G A
Sbjct: 124 SNRGKCGKCGQNFERGEIKAHNKGKA 149


>Z81466-2|CAC42256.1|  954|Caenorhabditis elegans Hypothetical
           protein C09H6.2b protein.
          Length = 954

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 21/80 (26%), Positives = 31/80 (38%)
 Frame = -1

Query: 397 AVISTVVSMTCPEEYFATMTPLP*APPNSCGRGGESSYGSPQMPHFPLLVSH*RWKPPQL 218
           AV     + T PE    T +  P  PP+  G  G    G  Q   F ++     +  P L
Sbjct: 5   AVAQATAATTSPEHGVPTSSATPTPPPSKGGGAGGGGGGEQQQVPFQMIPPGHFFANPFL 64

Query: 217 MPSSS*LILVPKPARQAEAR 158
            P    +     PA++ EA+
Sbjct: 65  NPY---IPTAGAPAQEGEAQ 81


>Z81466-1|CAB03869.1|  982|Caenorhabditis elegans Hypothetical
           protein C09H6.2a protein.
          Length = 982

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 21/80 (26%), Positives = 31/80 (38%)
 Frame = -1

Query: 397 AVISTVVSMTCPEEYFATMTPLP*APPNSCGRGGESSYGSPQMPHFPLLVSH*RWKPPQL 218
           AV     + T PE    T +  P  PP+  G  G    G  Q   F ++     +  P L
Sbjct: 5   AVAQATAATTSPEHGVPTSSATPTPPPSKGGGAGGGGGGEQQQVPFQMIPPGHFFANPFL 64

Query: 217 MPSSS*LILVPKPARQAEAR 158
            P    +     PA++ EA+
Sbjct: 65  NPY---IPTAGAPAQEGEAQ 81


>Z71258-3|CAA95778.1|  187|Caenorhabditis elegans Hypothetical
           protein C01H6.3 protein.
          Length = 187

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 252 NNGK--CGICGDPYDDSPPRPHELGGAYGNGVIVAK 353
           NNG   C +CG+ YDD     H+    YG+  I++K
Sbjct: 81  NNGLRICFVCGEQYDDQVIEEHK-EKCYGDWSILSK 115


>U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 9 protein.
          Length = 703

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 270 ICGDPYDDSPPRPHELGGAYGNGVI 344
           +CGDP D SPP    +   + N V+
Sbjct: 600 VCGDPNDPSPPLLQMMKDPFANYVV 624


>AJ133374-1|CAB40208.1|  954|Caenorhabditis elegans lin-10 protein
           protein.
          Length = 954

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 21/80 (26%), Positives = 31/80 (38%)
 Frame = -1

Query: 397 AVISTVVSMTCPEEYFATMTPLP*APPNSCGRGGESSYGSPQMPHFPLLVSH*RWKPPQL 218
           AV     + T PE    T +  P  PP+  G  G    G  Q   F ++     +  P L
Sbjct: 5   AVAQATAATTSPEHGVPTSSATPTPPPSKGGGAGGGGGGEQQQVPFQMIPPGHFFANPFL 64

Query: 217 MPSSS*LILVPKPARQAEAR 158
            P    +     PA++ EA+
Sbjct: 65  NPY---IPTAGAPAQEGEAQ 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,610,834
Number of Sequences: 27780
Number of extensions: 243320
Number of successful extensions: 854
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -