Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h10f
(481 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-1|AAK18854.2| 469|Caenorhabditis elegans Hypothetical pr... 28 3.1
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical pr... 28 4.0
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 28 4.0
AF016688-3|AAB66076.2| 674|Caenorhabditis elegans Hypothetical ... 28 4.0
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 27 7.0
U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 27 7.0
AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribo... 27 7.0
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 27 7.0
AC024200-15|AAF36011.1| 945|Caenorhabditis elegans Poly(adp-rib... 27 7.0
Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z71258-3|CAA95778.1| 187|Caenorhabditis elegans Hypothetical pr... 27 9.3
U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fb... 27 9.3
AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protei... 27 9.3
>U32305-1|AAK18854.2| 469|Caenorhabditis elegans Hypothetical
protein B0336.6 protein.
Length = 469
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +3
Query: 279 DPYDDSPPRPHELGGAYGNGVIVAK---YSSGQ 368
D DD PP P +GG+ GV + YSS Q
Sbjct: 365 DDMDDLPPPPESVGGSSAYGVFAGRTESYSSSQ 397
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 174 ARPKLEMRAPPPCRVHEQSPT 112
ARP MRAPPP +E PT
Sbjct: 73 ARPPSAMRAPPPQPTYENRPT 93
>Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical
protein T02C1.1 protein.
Length = 160
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 144 PPCRVHEQSPTRQRMQGNMTTAYFSCFVLKFENTRYYE 31
P CR H +P R R ++T +Y S + +T YYE
Sbjct: 43 PLCRAHTGNPIRNRQLESLTMSYVSS---RNISTEYYE 77
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 27.9 bits (59), Expect = 4.0
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = +3
Query: 147 EPASRASAWRAGFGTRINYDDDGINCGGFHRQWETNNGKCGICGDPYDDSPPRPHELGGA 326
+P R + G N+ G GG QW N G G + +++ P GG
Sbjct: 454 KPVMRGRGFGGAGGGAGNHGQRGGQRGG--GQWGGNAGPGGYYPNHFNNGYDMPMPWGGG 511
Query: 327 YGNGVIVAKYSSG 365
YG + Y G
Sbjct: 512 YGGDMGYGAYGGG 524
>AF016688-3|AAB66076.2| 674|Caenorhabditis elegans Hypothetical
protein F18A12.4 protein.
Length = 674
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +3
Query: 195 INYDDDGINCGGFHRQWETNNGKCGIC-GDPYD--DSPPRPHELGGAYGNGVIVAKYSSG 365
+ YD++G G + T GK G C D YD D P ++ G + I+A +
Sbjct: 528 LGYDENGKPMDGIRLEHVTEYGKQGQCLVDQYDNYDDPVYGKKMNGTHSINEIIADWVGH 587
Query: 366 QV 371
+V
Sbjct: 588 EV 589
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 337 PLP*APPNSCGRGGESSYGSPQMPHFP 257
P P PP GR GE GSP P P
Sbjct: 188 PGPAGPPGENGRNGEPQPGSPGEPGRP 214
>U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical
protein F41F3.3 protein.
Length = 156
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 331 P*APPNSCGRGGESSYGSPQMPHFPL 254
P PP+ CG GG PQ+P L
Sbjct: 32 PPPPPSPCGCGGGGGLALPQLPPLSL 57
>AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-1 protein.
Length = 945
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 249 TNNGKCGICGDPYDDSPPRPHELGGA 326
+N GKCG CG ++ + H G A
Sbjct: 124 SNRGKCGKCGQNFERGEIKAHNKGKA 149
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 322 PPNSCGRGGESSYGSPQMPHF 260
PP RGG +G P PHF
Sbjct: 782 PPPPSFRGGRGGHGGPPPPHF 802
>AC024200-15|AAF36011.1| 945|Caenorhabditis elegans
Poly(adp-ribose) metabolism enzymeprotein 1 protein.
Length = 945
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 249 TNNGKCGICGDPYDDSPPRPHELGGA 326
+N GKCG CG ++ + H G A
Sbjct: 124 SNRGKCGKCGQNFERGEIKAHNKGKA 149
>Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical
protein C09H6.2b protein.
Length = 954
Score = 26.6 bits (56), Expect = 9.3
Identities = 21/80 (26%), Positives = 31/80 (38%)
Frame = -1
Query: 397 AVISTVVSMTCPEEYFATMTPLP*APPNSCGRGGESSYGSPQMPHFPLLVSH*RWKPPQL 218
AV + T PE T + P PP+ G G G Q F ++ + P L
Sbjct: 5 AVAQATAATTSPEHGVPTSSATPTPPPSKGGGAGGGGGGEQQQVPFQMIPPGHFFANPFL 64
Query: 217 MPSSS*LILVPKPARQAEAR 158
P + PA++ EA+
Sbjct: 65 NPY---IPTAGAPAQEGEAQ 81
>Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical
protein C09H6.2a protein.
Length = 982
Score = 26.6 bits (56), Expect = 9.3
Identities = 21/80 (26%), Positives = 31/80 (38%)
Frame = -1
Query: 397 AVISTVVSMTCPEEYFATMTPLP*APPNSCGRGGESSYGSPQMPHFPLLVSH*RWKPPQL 218
AV + T PE T + P PP+ G G G Q F ++ + P L
Sbjct: 5 AVAQATAATTSPEHGVPTSSATPTPPPSKGGGAGGGGGGEQQQVPFQMIPPGHFFANPFL 64
Query: 217 MPSSS*LILVPKPARQAEAR 158
P + PA++ EA+
Sbjct: 65 NPY---IPTAGAPAQEGEAQ 81
>Z71258-3|CAA95778.1| 187|Caenorhabditis elegans Hypothetical
protein C01H6.3 protein.
Length = 187
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 252 NNGK--CGICGDPYDDSPPRPHELGGAYGNGVIVAK 353
NNG C +CG+ YDD H+ YG+ I++K
Sbjct: 81 NNGLRICFVCGEQYDDQVIEEHK-EKCYGDWSILSK 115
>U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fbf)
domain-containingprotein 9 protein.
Length = 703
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 270 ICGDPYDDSPPRPHELGGAYGNGVI 344
+CGDP D SPP + + N V+
Sbjct: 600 VCGDPNDPSPPLLQMMKDPFANYVV 624
>AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protein
protein.
Length = 954
Score = 26.6 bits (56), Expect = 9.3
Identities = 21/80 (26%), Positives = 31/80 (38%)
Frame = -1
Query: 397 AVISTVVSMTCPEEYFATMTPLP*APPNSCGRGGESSYGSPQMPHFPLLVSH*RWKPPQL 218
AV + T PE T + P PP+ G G G Q F ++ + P L
Sbjct: 5 AVAQATAATTSPEHGVPTSSATPTPPPSKGGGAGGGGGGEQQQVPFQMIPPGHFFANPFL 64
Query: 217 MPSSS*LILVPKPARQAEAR 158
P + PA++ EA+
Sbjct: 65 NPY---IPTAGAPAQEGEAQ 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,610,834
Number of Sequences: 27780
Number of extensions: 243320
Number of successful extensions: 854
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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