BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11h10f (481 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U32305-1|AAK18854.2| 469|Caenorhabditis elegans Hypothetical pr... 28 3.1 U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 28 3.1 Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical pr... 28 4.0 AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 28 4.0 AF016688-3|AAB66076.2| 674|Caenorhabditis elegans Hypothetical ... 28 4.0 Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 27 7.0 U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical pr... 27 7.0 AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribo... 27 7.0 AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 27 7.0 AC024200-15|AAF36011.1| 945|Caenorhabditis elegans Poly(adp-rib... 27 7.0 Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical pr... 27 9.3 Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical pr... 27 9.3 Z71258-3|CAA95778.1| 187|Caenorhabditis elegans Hypothetical pr... 27 9.3 U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fb... 27 9.3 AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protei... 27 9.3 >U32305-1|AAK18854.2| 469|Caenorhabditis elegans Hypothetical protein B0336.6 protein. Length = 469 Score = 28.3 bits (60), Expect = 3.1 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%) Frame = +3 Query: 279 DPYDDSPPRPHELGGAYGNGVIVAK---YSSGQ 368 D DD PP P +GG+ GV + YSS Q Sbjct: 365 DDMDDLPPPPESVGGSSAYGVFAGRTESYSSSQ 397 >U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical protein C18H9.8 protein. Length = 674 Score = 28.3 bits (60), Expect = 3.1 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -2 Query: 174 ARPKLEMRAPPPCRVHEQSPT 112 ARP MRAPPP +E PT Sbjct: 73 ARPPSAMRAPPPQPTYENRPT 93 >Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical protein T02C1.1 protein. Length = 160 Score = 27.9 bits (59), Expect = 4.0 Identities = 14/38 (36%), Positives = 20/38 (52%) Frame = -2 Query: 144 PPCRVHEQSPTRQRMQGNMTTAYFSCFVLKFENTRYYE 31 P CR H +P R R ++T +Y S + +T YYE Sbjct: 43 PLCRAHTGNPIRNRQLESLTMSYVSS---RNISTEYYE 77 >AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical protein F58D5.1 protein. Length = 611 Score = 27.9 bits (59), Expect = 4.0 Identities = 19/73 (26%), Positives = 27/73 (36%) Frame = +3 Query: 147 EPASRASAWRAGFGTRINYDDDGINCGGFHRQWETNNGKCGICGDPYDDSPPRPHELGGA 326 +P R + G N+ G GG QW N G G + +++ P GG Sbjct: 454 KPVMRGRGFGGAGGGAGNHGQRGGQRGG--GQWGGNAGPGGYYPNHFNNGYDMPMPWGGG 511 Query: 327 YGNGVIVAKYSSG 365 YG + Y G Sbjct: 512 YGGDMGYGAYGGG 524 >AF016688-3|AAB66076.2| 674|Caenorhabditis elegans Hypothetical protein F18A12.4 protein. Length = 674 Score = 27.9 bits (59), Expect = 4.0 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Frame = +3 Query: 195 INYDDDGINCGGFHRQWETNNGKCGIC-GDPYD--DSPPRPHELGGAYGNGVIVAKYSSG 365 + YD++G G + T GK G C D YD D P ++ G + I+A + Sbjct: 528 LGYDENGKPMDGIRLEHVTEYGKQGQCLVDQYDNYDDPVYGKKMNGTHSINEIIADWVGH 587 Query: 366 QV 371 +V Sbjct: 588 EV 589 >Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical protein C53B4.5 protein. Length = 289 Score = 27.1 bits (57), Expect = 7.0 Identities = 13/27 (48%), Positives = 13/27 (48%) Frame = -1 Query: 337 PLP*APPNSCGRGGESSYGSPQMPHFP 257 P P PP GR GE GSP P P Sbjct: 188 PGPAGPPGENGRNGEPQPGSPGEPGRP 214 >U55366-2|AAA97981.1| 156|Caenorhabditis elegans Hypothetical protein F41F3.3 protein. Length = 156 Score = 27.1 bits (57), Expect = 7.0 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = -1 Query: 331 P*APPNSCGRGGESSYGSPQMPHFPL 254 P PP+ CG GG PQ+P L Sbjct: 32 PPPPPSPCGCGGGGGLALPQLPPLSL 57 >AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribose metabolism enzyme-1 protein. Length = 945 Score = 27.1 bits (57), Expect = 7.0 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +3 Query: 249 TNNGKCGICGDPYDDSPPRPHELGGA 326 +N GKCG CG ++ + H G A Sbjct: 124 SNRGKCGKCGQNFERGEIKAHNKGKA 149 >AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical protein D1007.7 protein. Length = 988 Score = 27.1 bits (57), Expect = 7.0 Identities = 10/21 (47%), Positives = 11/21 (52%) Frame = -1 Query: 322 PPNSCGRGGESSYGSPQMPHF 260 PP RGG +G P PHF Sbjct: 782 PPPPSFRGGRGGHGGPPPPHF 802 >AC024200-15|AAF36011.1| 945|Caenorhabditis elegans Poly(adp-ribose) metabolism enzymeprotein 1 protein. Length = 945 Score = 27.1 bits (57), Expect = 7.0 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +3 Query: 249 TNNGKCGICGDPYDDSPPRPHELGGA 326 +N GKCG CG ++ + H G A Sbjct: 124 SNRGKCGKCGQNFERGEIKAHNKGKA 149 >Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical protein C09H6.2b protein. Length = 954 Score = 26.6 bits (56), Expect = 9.3 Identities = 21/80 (26%), Positives = 31/80 (38%) Frame = -1 Query: 397 AVISTVVSMTCPEEYFATMTPLP*APPNSCGRGGESSYGSPQMPHFPLLVSH*RWKPPQL 218 AV + T PE T + P PP+ G G G Q F ++ + P L Sbjct: 5 AVAQATAATTSPEHGVPTSSATPTPPPSKGGGAGGGGGGEQQQVPFQMIPPGHFFANPFL 64 Query: 217 MPSSS*LILVPKPARQAEAR 158 P + PA++ EA+ Sbjct: 65 NPY---IPTAGAPAQEGEAQ 81 >Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical protein C09H6.2a protein. Length = 982 Score = 26.6 bits (56), Expect = 9.3 Identities = 21/80 (26%), Positives = 31/80 (38%) Frame = -1 Query: 397 AVISTVVSMTCPEEYFATMTPLP*APPNSCGRGGESSYGSPQMPHFPLLVSH*RWKPPQL 218 AV + T PE T + P PP+ G G G Q F ++ + P L Sbjct: 5 AVAQATAATTSPEHGVPTSSATPTPPPSKGGGAGGGGGGEQQQVPFQMIPPGHFFANPFL 64 Query: 217 MPSSS*LILVPKPARQAEAR 158 P + PA++ EA+ Sbjct: 65 NPY---IPTAGAPAQEGEAQ 81 >Z71258-3|CAA95778.1| 187|Caenorhabditis elegans Hypothetical protein C01H6.3 protein. Length = 187 Score = 26.6 bits (56), Expect = 9.3 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = +3 Query: 252 NNGK--CGICGDPYDDSPPRPHELGGAYGNGVIVAK 353 NNG C +CG+ YDD H+ YG+ I++K Sbjct: 81 NNGLRICFVCGEQYDDQVIEEHK-EKCYGDWSILSK 115 >U39854-2|AAA81077.2| 703|Caenorhabditis elegans Puf (pumilio/fbf) domain-containingprotein 9 protein. Length = 703 Score = 26.6 bits (56), Expect = 9.3 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = +3 Query: 270 ICGDPYDDSPPRPHELGGAYGNGVI 344 +CGDP D SPP + + N V+ Sbjct: 600 VCGDPNDPSPPLLQMMKDPFANYVV 624 >AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protein protein. Length = 954 Score = 26.6 bits (56), Expect = 9.3 Identities = 21/80 (26%), Positives = 31/80 (38%) Frame = -1 Query: 397 AVISTVVSMTCPEEYFATMTPLP*APPNSCGRGGESSYGSPQMPHFPLLVSH*RWKPPQL 218 AV + T PE T + P PP+ G G G Q F ++ + P L Sbjct: 5 AVAQATAATTSPEHGVPTSSATPTPPPSKGGGAGGGGGGEQQQVPFQMIPPGHFFANPFL 64 Query: 217 MPSSS*LILVPKPARQAEAR 158 P + PA++ EA+ Sbjct: 65 NPY---IPTAGAPAQEGEAQ 81 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,610,834 Number of Sequences: 27780 Number of extensions: 243320 Number of successful extensions: 854 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 828 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 854 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 882200194 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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