Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h10f
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   1.7  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   3.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.1  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 91  ISLHSLPCWRLFVHTAGWWSPHLELRPGVP 180
           +SLH    WR F + A   +P+ +   G P
Sbjct: 301 LSLHGQLLWREFFYCAATKNPNFDRMQGNP 330


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 480 PGGISRSIPVRYCWGRC 430
           PG + + IP   C GRC
Sbjct: 41  PGCVPKPIPSYACRGRC 57


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 179 GTPGRSSRCGLHHPAVCTNSRQQGN 105
           G  G +S   +H P V TNS    N
Sbjct: 490 GYDGAASTAVIHEPVVETNSSPSPN 514


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 243 WETNNGKCGICGDPYD 290
           W T+ G+  + GD YD
Sbjct: 139 WHTDQGEEFVPGDDYD 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,604
Number of Sequences: 438
Number of extensions: 2914
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)