Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h10f
         (481 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65510.1 68414.m07433 expressed protein                             34   0.043
At4g35540.1 68417.m05051 expressed protein transcription factor ...    29   1.2  
At4g11050.1 68417.m01796 endo-1,4-beta-glucanase, putative / cel...    29   2.1  
At4g08097.1 68417.m01316 hypothetical protein                          28   3.7  
At1g65500.1 68414.m07432 expressed protein                             28   3.7  
At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein ...    27   6.5  
At1g52100.1 68414.m05879 jacalin lectin family protein similar t...    27   6.5  

>At1g65510.1 68414.m07433 expressed protein
          Length = 80

 Score = 34.3 bits (75), Expect = 0.043
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = +3

Query: 54  ISTQNMRNMQLSYFLAFVALLATVRAHGRVVEPASRASAWRAGFGTRINYDDDGINCGGF 233
           + ++   NM ++  L+ + L+ T+ +  +VVE  SR  A     G  I +     +CG  
Sbjct: 1   MGSKTSTNM-VALLLSLLILIFTLSSQVKVVEATSRKLA----NGRPIVWTPASRSCGAS 55

Query: 234 HRQWETNNGKC 266
           H  W+ NNG C
Sbjct: 56  HASWKKNNGPC 66


>At4g35540.1 68417.m05051 expressed protein transcription factor
           IIIB chain BRF1, Saccharomycescerevisiae, PIR2:A44072
          Length = 527

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = +3

Query: 219 NCGGFHRQWETNNGKCGICGD--PYDDSPPRPHELGGAYGNGVIVAKYSSGQVID 377
           N   F R  +T N  CG CG    YD+   +   + G  G  + V     G V+D
Sbjct: 7   NGSNFERDEDTGNSYCGGCGTLREYDNYEAQLGGIRGPQGTYIRVGTIGRGSVLD 61


>At4g11050.1 68417.m01796 endo-1,4-beta-glucanase, putative /
           cellulase, putative similar to endo-beta-1,4-glucanase
           GI:4972236 from [Fragaria x ananassa]
          Length = 626

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = -1

Query: 226 PQLMPSSS*LILVPKPARQAEARDAGSTTLPCARTVANKATNARKYDNCIFLMFCVEI*K 47
           P + P+ S +I+ P P  Q +     + + P   T++ K TN+ K +  ++  +   +  
Sbjct: 501 PGVSPTPSPVIIKPAPVPQRKPTKPPAASSPSPITISQKMTNSWKNEGKVYYRYSTILTN 560

Query: 46  HS-----ILRIILTILH 11
            S     IL+I +T L+
Sbjct: 561 RSTKTLKILKISITKLY 577


>At4g08097.1 68417.m01316 hypothetical protein
          Length = 346

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 339 VIVAKYSSGQVIDTTVEITAYHRGYWEFKLCTDPSN 446
           V+V K +S +   + V++TA+   YW FK  TD  N
Sbjct: 155 VVVIKLNSTKCKPSMVDMTAFRMNYWVFK--TDSVN 188


>At1g65500.1 68414.m07432 expressed protein
          Length = 86

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 87  SYFLAFVALLATVRAHGRVVEPASRASAWRAGF-GTRINYDDDGINCG 227
           ++ L  + +L T+ +  +VVE   R  AW  GF GT I Y     +CG
Sbjct: 10  AFMLPLLLILFTLSSQLKVVESTGRKLAW--GFSGTPIVYTPPSRSCG 55


>At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 493

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 342 IVAKYSSGQVIDTTVEITAYHRGYWEFKLCTDPSNNEQE 458
           + A  SS QV +T  E+    R   EF L   P N E+E
Sbjct: 453 VPATASSSQVTETVQEVKKLKRRVLEFDLNELPPNEEEE 491


>At1g52100.1 68414.m05879 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain; contains non-consensus AG
           donor splice site at exon3
          Length = 381

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 186 GTRINYDDDGINCGGFHRQWETNNGKCGICGDPYDDSPPRPHELGGAYGNG 338
           G++   +  G    GFH +  +     G+   P   SPP P +L G  G+G
Sbjct: 258 GSKFKLERQGDAIVGFHGRVGSCIDGIGVYYAPLPPSPPPPEKLQGQGGDG 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,920,653
Number of Sequences: 28952
Number of extensions: 233383
Number of successful extensions: 887
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)