BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11h09r (619 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 27 1.6 SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 1.6 >SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1095 Score = 27.5 bits (58), Expect = 1.6 Identities = 8/28 (28%), Positives = 17/28 (60%) Frame = +2 Query: 2 RVQATTHVCTALCPISHKCAERTHSAER 85 ++ AT ++C A+C I C++R ++ Sbjct: 969 QIYATENICVAICKICRFCSQRVQDLDK 996 >SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Schizosaccharomyces pombe|chr 1|||Manual Length = 1995 Score = 27.5 bits (58), Expect = 1.6 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +1 Query: 406 GAVVVXGSPPLVAPPPAVGSDVGAPL 483 GA + G+P + AP P G + PL Sbjct: 1912 GATAISGNPGMPAPVPLTGKETAVPL 1937 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,508,319 Number of Sequences: 5004 Number of extensions: 24139 Number of successful extensions: 74 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 74 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 271646730 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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