Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h09r
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0537 - 23734010-23734715,23735326-23735333 32 0.32
06_01_0115 - 901385-901495,902134-902163,902847-902927,903019-90... 31 0.73
01_06_0479 + 29631435-29631608,29632769-29632864,29633065-296331... 31 0.73
02_01_0531 - 3856343-3856373,3856426-3856506,3857972-3858097,385... 31 0.97
07_03_1043 + 23506148-23506226,23506344-23506693,23506782-23507075 30 1.7
07_01_0974 + 8211602-8212051 29 3.0
02_05_0814 - 31970558-31971126,31971242-31971413 29 3.0
02_04_0411 + 22670418-22670499,22670708-22671045 28 5.2
11_01_0746 + 6294277-6294687 28 6.8
08_02_1221 - 25371247-25371387,25371472-25372385,25372675-25373350 28 6.8
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 28 6.8
04_04_1615 + 34793511-34793660,34794013-34794070,34794163-347944... 28 6.8
02_04_0413 + 22681957-22682035,22682253-22682788 28 6.8
10_08_0158 - 15298902-15299111,15300557-15300655,15301375-153014... 27 9.0
02_01_0701 + 5238179-5238461,5238540-5238949,5240413-5240793,524... 27 9.0
01_01_0139 + 1263356-1264273 27 9.0
>02_04_0537 - 23734010-23734715,23735326-23735333
Length = 237
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 509 PXXRRRRXXSGAPTSDPTAGGGATSGGDPXTTTAPRST-AGTCPRP 375
P RR + +PT+ GGG S P T ++PRS+ A P P
Sbjct: 102 PSPPRRASPARSPTAGAAGGGGRRSPASPRTASSPRSSRARAHPAP 147
>06_01_0115 -
901385-901495,902134-902163,902847-902927,903019-903084,
903207-903284,904708-904791,904881-904970,905069-905345,
905765-905973
Length = 341
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = -3
Query: 512 RPXXRRRRXXSGAPTSDPTAGGGATSGGDPXTTTAP--RSTAGTCPRPTEE 366
R R R +GAP+S + GGG GG P A RS P T++
Sbjct: 14 RDALRHVRAPAGAPSSSSSGGGGGGGGGGPVIEMASLLRSNRPYAPLSTDD 64
>01_06_0479 +
29631435-29631608,29632769-29632864,29633065-29633106,
29633220-29633306,29635246-29635272,29635536-29635916
Length = 268
Score = 31.1 bits (67), Expect = 0.73
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 494 RRXXSGAPTSDPTAGGGATSGGDPXTTTAPRSTAGTCPRP 375
+R S A TS ++G GA P T R + G CPRP
Sbjct: 7 KRRSSSASTSS-SSGDGAAVSDRPRGVTRKRRSGGRCPRP 45
>02_01_0531 -
3856343-3856373,3856426-3856506,3857972-3858097,
3858196-3858326,3858832-3858855,3859429-3859482,
3859967-3860136,3860322-3860380,3861274-3861390,
3861481-3861611,3861720-3861770,3862305-3862481
Length = 383
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 97 GERRTHV*FSYQSNNQEYKSRISYKSIIRVSL 192
GERR +V FS+ S + Y SR+ K++ +++
Sbjct: 211 GERRGNVRFSHDSKRRPYLSRVEVKAVAEITI 242
>07_03_1043 + 23506148-23506226,23506344-23506693,23506782-23507075
Length = 240
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = -3
Query: 515 ERPXXRRRRXXSGAPTSDPTAGGGATSGGDP 423
ERP RRRR GA GGG GGDP
Sbjct: 32 ERPRARRRRRR-GARCVGGGGGGGEVDGGDP 61
>07_01_0974 + 8211602-8212051
Length = 149
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = -3
Query: 524 AXRERPXXRRRRXXSGAPTSDPTAGGGATSGG-DPXTTTAPRSTAGTCPRPT 372
A + P ++ S P S P GGG GG P T AP + C T
Sbjct: 34 AQQPPPLVQQFYYYSPPPPSSPVGGGGTGGGGPSPPTNPAPPAVPCNCGTTT 85
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 470 TSDPTAGGGATSGGDPXTTTAPRSTAGTCPRPT 372
+S ++GGG GG T ++P S T P P+
Sbjct: 126 SSSSSSGGGGGGGGGGSTPSSPSSPTPTTPNPS 158
>02_04_0411 + 22670418-22670499,22670708-22671045
Length = 139
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 500 RRRRXXSGAPTSDPTAGGGATSGGD 426
R+ + P +DP AGGG GGD
Sbjct: 24 RQEPQPNEGPAADPNAGGGGGGGGD 48
>11_01_0746 + 6294277-6294687
Length = 136
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 479 GAPTSDPTAGGGATSGGDPXTTTAPRSTAGTCPRPT 372
G + T G AT GG+ A RS +G RPT
Sbjct: 44 GGRRATTTKGAAATLGGNSTGEEAARSRSGASSRPT 79
>08_02_1221 - 25371247-25371387,25371472-25372385,25372675-25373350
Length = 576
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 12 LRHTYVLRYVRSPINVPKERIRPKGAQS 95
L+H VLR +P+ VP I KGAQ+
Sbjct: 504 LKHLRVLRAEENPLQVPPRDIALKGAQA 531
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 391 PAVERGAVVVXGSPPLVAPPPAVGSDVGAP 480
P+ R ++ V SPPL+ PPP GS P
Sbjct: 41 PSPPRASIPVSSSPPLL-PPPVAGSKPQLP 69
>04_04_1615 +
34793511-34793660,34794013-34794070,34794163-34794410,
34794485-34794601,34795309-34795369,34795860-34795954,
34796048-34796122,34796316-34796401,34796529-34796578,
34796667-34796707,34796784-34796948,34797204-34797271,
34797362-34797422,34797878-34798393
Length = 596
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 509 PXXRRRRXXSGAPTSDPTAGGGAT-SGGDPXTTTAPRSTAGTCP 381
P +R+ AP+S GGG T S P + R+ G+CP
Sbjct: 538 PMLQRQASSLSAPSSPSPRGGGMTRSMSMPGFASLTRTPGGSCP 581
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -3
Query: 518 RERPXXRRRRXXSGAPTSDPTAGGGATSGGDPXTTTAPRSTAGTCPR 378
R+ P R P PTA A +GGD T++ +G P+
Sbjct: 23 RQEPHQNSRLYVRAEPNEGPTADPDAGAGGDHGTSSGNGKASGHRPQ 69
>10_08_0158 -
15298902-15299111,15300557-15300655,15301375-15301443,
15301535-15301681,15301762-15301839,15302221-15302264,
15302521-15302603,15303394-15303620
Length = 318
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -3
Query: 482 SGAPTSDPTAGGGATSGGDPXTTTAPRSTAG 390
SGA S T+GGG S G P AP G
Sbjct: 3 SGAAHSASTSGGGGGSEGSPTGRAAPGMQGG 33
>02_01_0701 +
5238179-5238461,5238540-5238949,5240413-5240793,
5241112-5241244,5241495-5241622,5241714-5241914
Length = 511
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -3
Query: 482 SGAPTSDP--TAGGGATSGGDPXTTTAPRSTAGTCPRP 375
SGAP S P TAG T P +T+A + + P P
Sbjct: 35 SGAPFSQPPSTAGTVKTEAPPPPSTSASSAASAAAPAP 72
>01_01_0139 + 1263356-1264273
Length = 305
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/38 (50%), Positives = 21/38 (55%)
Frame = -3
Query: 512 RPXXRRRRXXSGAPTSDPTAGGGATSGGDPXTTTAPRS 399
RP RR R S APT AG ATS P TTT+ R+
Sbjct: 107 RPSSRRPR--SSAPTRRTAAG--ATSPTTPSTTTSARA 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,511,598
Number of Sequences: 37544
Number of extensions: 220523
Number of successful extensions: 1279
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1269
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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