Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h09r
(619 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 30 1.3
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 30 1.7
SB_8749| Best HMM Match : SCP (HMM E-Value=4.9e-16) 30 1.7
SB_8748| Best HMM Match : Astacin (HMM E-Value=0) 29 3.0
SB_40825| Best HMM Match : fn3 (HMM E-Value=0.078) 28 7.0
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45) 28 7.0
SB_17219| Best HMM Match : Put_Phosphatase (HMM E-Value=5.7) 28 7.0
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3) 28 7.0
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
>SB_50769| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 482 SGAPTSDPTAGGGATSGGDP-XTTTAPRSTAG 390
S APTS GG TSG P TT AP++T G
Sbjct: 99 SAAPTSAGPTTGGQTSGSTPGGTTAAPQTTPG 130
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 509 PXXRRRRXXSGAPTSDPTAGGGATSGGDPXTTTAPRSTAGTCPRPTE 369
P + + +G PT PT G T P TT P STA PR +
Sbjct: 578 PTTKGKTTTTGHPTKTPTTTSGPTH--PPTTTARPTSTA-PAPRKAQ 621
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -3
Query: 479 GAP--TSDPTAGGGATSGGDPXTTTAPRST 396
GAP T+ PT G T+ G P TT AP +T
Sbjct: 300 GAPKTTASPTTAGVVTTTGAPSTTRAPPTT 329
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 482 SGAP--TSDPTAGGGATSGGDPXTTTAPRSTAGTCPRPTE 369
+GAP T PT G T+ G P TT AP +T P TE
Sbjct: 341 TGAPATTVAPTTTGAPTTTGAPTTTGAPSTT--EAPSTTE 378
>SB_8749| Best HMM Match : SCP (HMM E-Value=4.9e-16)
Length = 369
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 476 APTSDPTAGGGATSGGDPXTTTAPRSTAGTCPRPTEE 366
AP + T+G TSGG+ T T P T+ T ++E
Sbjct: 191 APGGNGTSGNTTTSGGNATTLTTPAPTSTTVVPSSQE 227
>SB_8748| Best HMM Match : Astacin (HMM E-Value=0)
Length = 757
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -3
Query: 509 PXXRRRRXXSGAPTSDPTAGGGATSGGDPXTTTAPRSTAGT 387
P SGAPTS P A SG P A +T T
Sbjct: 537 PTTAETAGTSGAPTSVPPASSAPASGAPPSGAPASGATTPT 577
>SB_40825| Best HMM Match : fn3 (HMM E-Value=0.078)
Length = 432
Score = 27.9 bits (59), Expect = 7.0
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Frame = -3
Query: 572 SGGTPE*IIRS*GQTRAXRERPXXRRRRXXSGAPTSDPTAGG----GATSGGDPXTTTAP 405
S G P +R G T A R G PT GG T GG TTT P
Sbjct: 159 SRGVPTQQLRP-GGTHATTTPRGYPRNNYTQGVPTQQLYPGGYPRNNYTQGGTHATTT-P 216
Query: 404 RST-AGTCPR--PTEE 366
R T A T PR PT++
Sbjct: 217 RGTHATTTPRGVPTQQ 232
>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
Length = 649
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 473 PTSDPTAGGGATSGGDPXTTTAPRSTAGTCPRPTE 369
PT+ P+ S DP TTT P +T T P T+
Sbjct: 385 PTTTPSKATAPIS--DPMTTTTPTTTKATTPTTTK 417
>SB_17219| Best HMM Match : Put_Phosphatase (HMM E-Value=5.7)
Length = 500
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -3
Query: 479 GAPTSDPTAGGGATSG 432
G P+SDP GG ATSG
Sbjct: 419 GDPSSDPLTGGSATSG 434
>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
Length = 531
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = -3
Query: 533 QTRAXRERPXXRRRRXXSGAPTSDPTAGGGATSGGDPXTTTAPRSTAGT 387
Q R +R +RR T+ PT + P TTTAP + T
Sbjct: 115 QQRLQHQRRLQHQRRLQHKTTTTAPTTTTAPATNTAPATTTAPNNDYST 163
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 479 GAPTSDPTAG-GGATSGGDPXTTTAPRSTAGT 387
G TS T+G GGAT GG +TAP + T
Sbjct: 538 GGATSGGTSGPGGATLGGTSGVSTAPTAVPTT 569
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,671,159
Number of Sequences: 59808
Number of extensions: 224561
Number of successful extensions: 948
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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