Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11h09r
(619 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC050291-1|AAH50291.1| 547|Homo sapiens glucocorticoid induced ... 33 1.1
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein. 31 2.5
S81243-1|AAB36006.1| 684|Homo sapiens CHN protein. 31 4.3
BC065377-1|AAH65377.1| 254|Homo sapiens FOXH1 protein protein. 30 5.7
BC034019-1|AAH34019.1| 373|Homo sapiens LIM domain binding 2 pr... 29 9.9
AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein. 29 9.9
AF068651-1|AAC77817.1| 373|Homo sapiens LIM-domain binding fact... 29 9.9
AF064493-1|AAC28343.1| 331|Homo sapiens LIM homeobox protein co... 29 9.9
AF064492-1|AAC28342.1| 373|Homo sapiens LIM homeobox protein co... 29 9.9
AF052389-1|AAC13274.1| 347|Homo sapiens LIM domain binding prot... 29 9.9
AF047337-1|AAC83552.1| 373|Homo sapiens LIM homeobox protein co... 29 9.9
>BC050291-1|AAH50291.1| 547|Homo sapiens glucocorticoid induced
transcript 1 protein.
Length = 547
Score = 32.7 bits (71), Expect = 1.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 509 PXXRRRRXXSGAPTSDPTAGGGATSGGDPXTTTAPRSTAGTCPRP 375
P R RR +G+P + AG G +GG AP + AG +P
Sbjct: 19 PSQRMRRSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGRLLQP 63
>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
Length = 1349
Score = 31.5 bits (68), Expect = 2.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 482 SGAPTSDPTAGGGATSGGDPXTTTAPRSTAGTCPRPT 372
+ A TS T+G G T P T+T ST T PT
Sbjct: 1186 TSAATSSTTSGSGTTPSPVPTTSTTSASTTSTTSAPT 1222
>S81243-1|AAB36006.1| 684|Homo sapiens CHN protein.
Length = 684
Score = 30.7 bits (66), Expect = 4.3
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = -3
Query: 509 PXXRRRRXXSGAPTSDPTAGGGATSGGDPXTTTAP---RSTAGTCPRPT 372
P S P P A G+T+G P T+AP ++AG P PT
Sbjct: 1 PTAEEGSPASPGPEPGPLAVPGSTAGASPRRTSAPPTLSASAGETPSPT 49
>BC065377-1|AAH65377.1| 254|Homo sapiens FOXH1 protein protein.
Length = 254
Score = 30.3 bits (65), Expect = 5.7
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -3
Query: 476 APTSDPTAGGGATSGGDPXTTTAPRSTAGTCPRPT 372
AP S P G SG + T P S G+CP PT
Sbjct: 213 APQSSPVPAGTGNSGEEAVPTPPPPS-GGSCPPPT 246
>BC034019-1|AAH34019.1| 373|Homo sapiens LIM domain binding 2
protein.
Length = 373
Score = 29.5 bits (63), Expect = 9.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 518 RERPXXRRRRXXSGAPTSDPTAGGGATSGGDPXTTTA 408
R+ RR+R S + TS+ +AG A S G TTA
Sbjct: 251 RQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTA 287
>AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein.
Length = 2448
Score = 29.5 bits (63), Expect = 9.9
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -3
Query: 482 SGAPTSDPTAGGGATSGGDPXTTTAPRSTAGTCPRPT 372
+ APTS T+G G T P T+ T T PT
Sbjct: 2397 TSAPTSSTTSGPGTTPSPVPTTSITSAPTTSTTSAPT 2433
>AF068651-1|AAC77817.1| 373|Homo sapiens LIM-domain binding factor
CLIM1 protein.
Length = 373
Score = 29.5 bits (63), Expect = 9.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 518 RERPXXRRRRXXSGAPTSDPTAGGGATSGGDPXTTTA 408
R+ RR+R S + TS+ +AG A S G TTA
Sbjct: 251 RQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTA 287
>AF064493-1|AAC28343.1| 331|Homo sapiens LIM homeobox protein
cofactor protein.
Length = 331
Score = 29.5 bits (63), Expect = 9.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 518 RERPXXRRRRXXSGAPTSDPTAGGGATSGGDPXTTTA 408
R+ RR+R S + TS+ +AG A S G TTA
Sbjct: 251 RQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTA 287
>AF064492-1|AAC28342.1| 373|Homo sapiens LIM homeobox protein
cofactor protein.
Length = 373
Score = 29.5 bits (63), Expect = 9.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 518 RERPXXRRRRXXSGAPTSDPTAGGGATSGGDPXTTTA 408
R+ RR+R S + TS+ +AG A S G TTA
Sbjct: 251 RQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTA 287
>AF052389-1|AAC13274.1| 347|Homo sapiens LIM domain binding protein
protein.
Length = 347
Score = 29.5 bits (63), Expect = 9.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 518 RERPXXRRRRXXSGAPTSDPTAGGGATSGGDPXTTTA 408
R+ RR+R S + TS+ +AG A S G TTA
Sbjct: 227 RQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTA 263
>AF047337-1|AAC83552.1| 373|Homo sapiens LIM homeobox protein
cofactor protein.
Length = 373
Score = 29.5 bits (63), Expect = 9.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 518 RERPXXRRRRXXSGAPTSDPTAGGGATSGGDPXTTTA 408
R+ RR+R S + TS+ +AG A S G TTA
Sbjct: 251 RQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTA 287
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,833,906
Number of Sequences: 237096
Number of extensions: 1022022
Number of successful extensions: 4591
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4580
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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