Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h09r
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64834-3|AAB04824.1|  437|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    29   3.5  
U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z68335-3|CAA92730.2|  540|Caenorhabditis elegans Hypothetical pr...    28   4.6  

>U64834-3|AAB04824.1|  437|Caenorhabditis elegans Hypothetical
           protein F54D11.1 protein.
          Length = 437

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 8   QATTHVCTALCPISHKCAERTHSAERRTVRGSDVHMFNFHINRIIRNTN 154
           Q  T+V TA  P++      T   +  T+R +DV +FN  +++II N +
Sbjct: 35  QGQTYV-TAFTPLTSNVQVHTSLEQLSTIRNADVLIFNNALSQIITNAD 82


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 509 PXXRRRRXXSGAPTSDPTAGGGATSGGDPXTTTAPRSTAGTCPRPT 372
           P  RR +  +G  T D T    +TS   P TTT   +   T   PT
Sbjct: 253 PTLRRMKRDAGDNTCDYTIESTSTSTTTPTTTTVTSTVTSTTTVPT 298


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 509 PXXRRRRXXSGAPTSDPTAGGGATSGGDPXTTTAPRSTAGTCPRPT 372
           P  RR +  +G  T D T    +TS   P TTT   +   T   PT
Sbjct: 253 PTLRRMKRDAGDNTCDYTIESTSTSTTTPTTTTVTSTVTSTTTVPT 298


>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
           protein R12C12.1a protein.
          Length = 979

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 2   RVQATTHVCTALCPISHKCAERT--HSAERRTVRGSDVHMFNFHINRIIRNTNHESLTK 172
           R +AT+++CTA   +++  A     H  +R T     VH    ++   +RN  HE + K
Sbjct: 346 RDKATSNICTAQALLANMSAMYAVYHGPQRLTEIARGVHKSTAYLAYHLRNAGHEIVHK 404


>Z68335-3|CAA92730.2|  540|Caenorhabditis elegans Hypothetical
           protein C29F4.2 protein.
          Length = 540

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 193 LDLLVLCFCKRFVICIPDYSID 128
           LDL+V CFC  F+  I  Y++D
Sbjct: 34  LDLIVWCFCYAFISVIYRYALD 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,990,843
Number of Sequences: 27780
Number of extensions: 164457
Number of successful extensions: 820
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)