Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h09r
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t...    29   2.5  
At1g49010.1 68414.m05495 myb family transcription factor contain...    29   2.5  
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen...    29   3.3  
At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative ...    29   3.3  
At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger) fa...    27   10.0 

>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to auxin
           down regulated GB:X69640 GI:296442 from [Glycine max];
           contains Pfam profile PF00234: Protease inhibitor/seed
           storage/LTP family
          Length = 297

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 376 GRGHVPAVERGAVVVXGSPPLVAPPPAV 459
           G G  P V R   VV   PP++ PPP V
Sbjct: 84  GGGKSPPVVRPPPVVVRPPPIIRPPPVV 111


>At1g49010.1 68414.m05495 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 314

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 385 HVPAVERGAVVVXGSP---PLVAPPPAVGSDVGAPL 483
           H P    G  +  G+P   P++APP  +GS VG P+
Sbjct: 236 HHPPTMAGLGMYGGAPVGQPIIAPPDHMGSAVGTPV 271


>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
           for histone protein GB:X15142 GI:3204 [Physarum
           polycephalum]
          Length = 614

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 479 GAPTSDPTAGGGATSGGDPXT 417
           GA +   +A GGATSGG P T
Sbjct: 340 GAASGGESASGGATSGGSPET 360


>At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative
           similar to RNA-directed RNA polymerase GB:CAA09697
           GI:4138282 [Nicotiana tabacum]
          Length = 1107

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +1

Query: 97  GERRTHV*FSYQSNNQEYKSRISYKSIIRVSLVDARGRSGR 219
           G R+ H  FS+    ++Y+  +SY++I ++ L   +GRS +
Sbjct: 129 GMRKLH--FSFSWYQKDYRLELSYENIWQIDLHSPQGRSSK 167


>At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles:PF05495 CHY zinc
           finger, PF00097 zinc finger, C3HC4 type (RING finger)
          Length = 291

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 44  ISHKCAERTHSAERRTVRGSDVHMFNFHINRIIRNT 151
           I+HKC+       R+T RGSD H  +  + +++ +T
Sbjct: 255 IAHKCSSCGSYNTRQTQRGSDSHSCSSGMPQVVGST 290


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,399,849
Number of Sequences: 28952
Number of extensions: 145659
Number of successful extensions: 473
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)