BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fmgV11h09f (443 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 27 1.3 SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 25 4.0 SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 25 5.2 SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 25 5.2 SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 25 6.9 SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 6.9 SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 24 9.1 SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces... 24 9.1 >SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 410 Score = 27.1 bits (57), Expect = 1.3 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = +2 Query: 5 TKMEDLSVEVYG--ENGAYYKAIVTDVLDNEVLVAFENDWQPESKF 136 ++ +DLS+ ++G +N +Y+ + ++ + DW PE +F Sbjct: 105 SETKDLSIFIHGLWKNTIFYEIPLLALVSESYFKFVDKDWSPEGQF 150 >SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual Length = 304 Score = 25.4 bits (53), Expect = 4.0 Identities = 7/18 (38%), Positives = 13/18 (72%) Frame = +2 Query: 287 LVIEYLEWDNCYTEIVPK 340 L +EY +W+ + E++PK Sbjct: 254 LWLEYRDWEKAFMEVIPK 271 >SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc27|Schizosaccharomyces pombe|chr 2|||Manual Length = 372 Score = 25.0 bits (52), Expect = 5.2 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%) Frame = +2 Query: 80 LDNEVLVAFENDWQPESKFPFSQVFLPPKDT--GKHTEFTENQEVEVFARSN 229 +D+E+ + + + QP S FP Q L K + K + + +FA S+ Sbjct: 60 IDDEINLEIDEESQPISNFPVLQYILCDKSSLQEKQSRLKSGYKTVIFALSS 111 >SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual Length = 629 Score = 25.0 bits (52), Expect = 5.2 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 6/94 (6%) Frame = +2 Query: 5 TKMEDLSVEVYGE---NGAYYKAIVTDVLDNEVLV-AFENDWQPESKFPFSQV--FLPPK 166 TK E+ + YG N + + D+LD +L + + D Q E+ F+Q L Sbjct: 446 TKGENTANNGYGPQTLNETSEEPSLDDILDTSLLQPSTQTDLQEENSVSFAQEDNSLSRW 505 Query: 167 DTGKHTEFTENQEVEVFARSNEKEACGWWTANIK 268 + F +NQ ++ AR +E W+T IK Sbjct: 506 EKIPIGTFRKNQYIKSMARRDELIRDEWFTLAIK 539 >SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit Rec11|Schizosaccharomyces pombe|chr 3|||Manual Length = 923 Score = 24.6 bits (51), Expect = 6.9 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = -2 Query: 295 YHKEITPHH---LDICSPPPTRFFLIRPSKYFHLLVLSK 188 +HK+ + + LDI + F +I S++FH L ++K Sbjct: 642 FHKDFSKLYKEILDIFNSTTVNFLMILCSRFFHRLAVNK 680 >SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 300 Score = 24.6 bits (51), Expect = 6.9 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -1 Query: 155 RKLEKTETLILAASHFQRLLEPRCRARR*QWPYNKHHFHR 36 + LEKTE LI SHF +L + R + + + H+ + Sbjct: 154 KNLEKTEDLIRTDSHF--VLNKELLSFRNDYEHRRKHYEK 191 >SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces pombe|chr 1|||Manual Length = 4924 Score = 24.2 bits (50), Expect = 9.1 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Frame = +2 Query: 2 KTKMEDLSVEVYGENGAYYKAIVTD----VLDNEVLVAFENDWQPESKFPF 142 K + ++++ + EN + ++D ++D VLV F +P++KFP+ Sbjct: 4281 KYRQYQINLKDFRENLLLTEEAISDCDLLIIDERVLVVFILFPEPDAKFPY 4331 >SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 316 Score = 24.2 bits (50), Expect = 9.1 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = -3 Query: 357 FTXRRSLGT-ISV*QLSHSRYSITRKSPLIILIFAVHHPHAS 235 FT R+ + T + SH + T ++P+ + +VHH H S Sbjct: 252 FTPRKPIDTFLEHRSSSHDHLTSTPRTPIALQRRSVHHLHDS 293 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,978,525 Number of Sequences: 5004 Number of extensions: 39551 Number of successful extensions: 95 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 95 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 162176800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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