Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h09f
         (443 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    27   1.3  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    25   4.0  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    25   5.2  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             25   5.2  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   6.9  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   6.9  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   9.1  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    24   9.1  

>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 5   TKMEDLSVEVYG--ENGAYYKAIVTDVLDNEVLVAFENDWQPESKF 136
           ++ +DLS+ ++G  +N  +Y+  +  ++        + DW PE +F
Sbjct: 105 SETKDLSIFIHGLWKNTIFYEIPLLALVSESYFKFVDKDWSPEGQF 150


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 287 LVIEYLEWDNCYTEIVPK 340
           L +EY +W+  + E++PK
Sbjct: 254 LWLEYRDWEKAFMEVIPK 271


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 80  LDNEVLVAFENDWQPESKFPFSQVFLPPKDT--GKHTEFTENQEVEVFARSN 229
           +D+E+ +  + + QP S FP  Q  L  K +   K +      +  +FA S+
Sbjct: 60  IDDEINLEIDEESQPISNFPVLQYILCDKSSLQEKQSRLKSGYKTVIFALSS 111


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
 Frame = +2

Query: 5   TKMEDLSVEVYGE---NGAYYKAIVTDVLDNEVLV-AFENDWQPESKFPFSQV--FLPPK 166
           TK E+ +   YG    N    +  + D+LD  +L  + + D Q E+   F+Q    L   
Sbjct: 446 TKGENTANNGYGPQTLNETSEEPSLDDILDTSLLQPSTQTDLQEENSVSFAQEDNSLSRW 505

Query: 167 DTGKHTEFTENQEVEVFARSNEKEACGWWTANIK 268
           +      F +NQ ++  AR +E     W+T  IK
Sbjct: 506 EKIPIGTFRKNQYIKSMARRDELIRDEWFTLAIK 539


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -2

Query: 295 YHKEITPHH---LDICSPPPTRFFLIRPSKYFHLLVLSK 188
           +HK+ +  +   LDI +     F +I  S++FH L ++K
Sbjct: 642 FHKDFSKLYKEILDIFNSTTVNFLMILCSRFFHRLAVNK 680


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 155 RKLEKTETLILAASHFQRLLEPRCRARR*QWPYNKHHFHR 36
           + LEKTE LI   SHF  +L     + R  + + + H+ +
Sbjct: 154 KNLEKTEDLIRTDSHF--VLNKELLSFRNDYEHRRKHYEK 191


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +2

Query: 2    KTKMEDLSVEVYGENGAYYKAIVTD----VLDNEVLVAFENDWQPESKFPF 142
            K +   ++++ + EN    +  ++D    ++D  VLV F    +P++KFP+
Sbjct: 4281 KYRQYQINLKDFRENLLLTEEAISDCDLLIIDERVLVVFILFPEPDAKFPY 4331


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 357 FTXRRSLGT-ISV*QLSHSRYSITRKSPLIILIFAVHHPHAS 235
           FT R+ + T +     SH   + T ++P+ +   +VHH H S
Sbjct: 252 FTPRKPIDTFLEHRSSSHDHLTSTPRTPIALQRRSVHHLHDS 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,525
Number of Sequences: 5004
Number of extensions: 39551
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)