Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h09f
         (443 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0904 + 21464762-21467479                                         30   0.73 
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610...    28   2.9  
07_03_1689 + 28710936-28711129,28711283-28711341,28711858-287118...    28   3.9  
11_01_0620 - 4964263-4965052,4965578-4965663,4966332-4966413,496...    27   5.1  
06_01_0658 + 4772855-4772983,4773108-4773218,4773335-4773366,477...    27   5.1  
03_06_0274 + 32797541-32797570,32797682-32797769,32798291-327984...    27   5.1  
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417...    27   6.8  

>10_08_0904 + 21464762-21467479
          Length = 905

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 89 RCRARR*QWPYNKHHFHRTPRPTNPP 12
          +C AR+ QW +     HR+PRPT PP
Sbjct: 3  KCAARQRQWRWPL--LHRSPRPTPPP 26


>10_02_0167 -
           6100676-6102111,6102174-6102708,6102967-6103975,
           6104006-6105036
          Length = 1336

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = +2

Query: 119 QPESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNEKEACGWWTANIKMMRGDFLVIE 298
           +P+S +P S + +     G  T  ++ +  +V     E+E C  W      M+     IE
Sbjct: 451 EPDSAYPDSDLHVSHIFGGSTTYSSKREYKKV-----EREVCSTWQGAAPKMKWSEQKIE 505

Query: 299 YLEWDNCYTEIVP 337
           + E D+  T ++P
Sbjct: 506 FSEEDHPKTSVIP 518


>07_03_1689 +
           28710936-28711129,28711283-28711341,28711858-28711892,
           28712123-28712226,28712325-28712397,28712495-28712553,
           28712656-28712721,28712815-28712898,28712995-28713059,
           28713152-28713342,28713522-28713612,28714076-28714134,
           28714732-28714872,28715214-28715321
          Length = 442

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +2

Query: 293 IEYLEWDNCYT-EIVPKDR 346
           ++YL++DNCY   I PKDR
Sbjct: 157 VDYLKYDNCYNLGIKPKDR 175


>11_01_0620 -
           4964263-4965052,4965578-4965663,4966332-4966413,
           4967052-4967156,4967600-4967772,4967988-4968101,
           4973939-4974037,4974320-4974398,4975424-4975492,
           4975955-4976061
          Length = 567

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 122 PESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNEK 235
           P+S+ P+    LPP  + K   FTE   V+  +  + K
Sbjct: 321 PKSERPYPSPLLPPPPSSKRPVFTEASSVDYLSGDSYK 358


>06_01_0658 +
           4772855-4772983,4773108-4773218,4773335-4773366,
           4773469-4773637,4773728-4773934,4774318-4774362
          Length = 230

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
 Frame = +2

Query: 29  EVYGENGAYYKAIVTDVLDNEVLVAFENDWQPESKFPFSQVFLPPKDTGKHTEFTENQEV 208
           E+  E G+ Y   V  +L + V   F   W       FS+ +LP +D        E+ E 
Sbjct: 120 ELEEELGSDYPIFVKPMLQSHVTGGF---WLSLPTH-FSRKYLPKRDETIRLVDEEDDEF 175

Query: 209 EVFARSNEKEACGWW---TANIKMMRGDFLVIEYLE 307
           +    +N++   G W   +   K++ GD LV + ++
Sbjct: 176 DTLYLANKRGLSGGWRGFSIAHKLVDGDCLVFQLIQ 211


>03_06_0274 +
           32797541-32797570,32797682-32797769,32798291-32798401,
           32798678-32798765,32798918-32799022,32799117-32799617,
           32799749-32799884,32800023-32800216,32800306-32800414,
           32800803-32800982
          Length = 513

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 186 SVCLPVSLGGKKT*ENGNF 130
           SVC PVSLGG+ +  +GNF
Sbjct: 245 SVCDPVSLGGRPSDFDGNF 263


>05_07_0173 +
           28140484-28140869,28141079-28141481,28141719-28141781,
           28142350-28142535,28144695-28145076,28145689-28145780,
           28145988-28146737,28146969-28147100,28147149-28147247,
           28147977-28148132,28150187-28150317,28150798-28151254,
           28151327-28151668,28152137-28153001,28153112-28153170,
           28153806-28154261,28154835-28154873,28155016-28155201
          Length = 1727

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 226 RPSKYFHLLVLSKFCVFASVFRW*ENLRK 140
           RP +  H+L   KF +   + +W E L K
Sbjct: 495 RPKRILHMLKKKKFVLMVELHKWLERLEK 523


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,250,947
Number of Sequences: 37544
Number of extensions: 266121
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)