Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11h09f
         (443 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2460| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.14 
SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_23759| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_976| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   5.3  
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            27   7.0  
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.0  
SB_41473| Best HMM Match : Shugoshin_C (HMM E-Value=8.2)               27   9.2  
SB_30792| Best HMM Match : SH3_1 (HMM E-Value=3.1)                     27   9.2  

>SB_2460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 555

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 284 FLVIEYLEWDNCYTEIVPKDRLXVKLPKTPIDKNTFHK 397
           F VI+Y  WD  + EIVP++R+        I +  ++K
Sbjct: 18  FFVIQYSGWDATFNEIVPRERIRPPNTNGSISRQMYYK 55



 Score = 31.5 bits (68), Expect = 0.32
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +2

Query: 11 MEDLSVEVYGENGAYYKAIV 70
          ME+L+VEV G+NGA+YK  V
Sbjct: 1  MEELAVEVCGKNGAFYKFFV 20


>SB_47600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = -2

Query: 325 RITVIPF*IFYHKEITPHHLDICSPP-----PTRFFLIRPSKYF 209
           R+ +  F  FYH   +   + + SP      PTRFF +  S+YF
Sbjct: 717 RLKIPEFYHFYHTSYSNSRVSVISPTTMFVSPTRFFRLNRSRYF 760


>SB_23759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 59  KAIVTDVLDNEVLVAFENDWQPESKFPFSQVFLPPKDTGKHTEF 190
           +A+    L+ EVL   E  WQ ++K    Q + P      H EF
Sbjct: 44  EAVKIIYLETEVLTVLEEVWQHQNKTVLLQFWSPEATAKLHAEF 87


>SB_976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +2

Query: 308 WDNCYTEIVPKDRLXVK--LPKTPIDKNTFHKF 400
           W NC++ I+  D++ V   +  + +DK + HKF
Sbjct: 363 WQNCHSCILENDKVKVAQGVSGSVVDKGSIHKF 395


>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1716

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 92   VLVAFENDWQPESKFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNEKE 238
            V +A +ND  P+SK P + +     +T    + ++N   + F +S EK+
Sbjct: 1539 VFMAIDNDNDPDSKIPRTSL-TNSGNTRLMAQISKNSARDTFTKSREKK 1586


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 366 FGNFTXRRSLGTISV*QLSHSRYSITRKSPLIILIFAVHHPHASFSL 226
           + N   RR LGT        + +  +  S  II+I  +HH H S S+
Sbjct: 3   YKNLKKRRQLGTSDRRSCGQNNHPSSSSSSSIIIIIIIHH-HPSSSI 48


>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 276 LIILIFAVHHPHASFSLDLANTSTSWFSVNSVCLPVSL 163
           LII IF VH   A +++  A     WF++N   + + L
Sbjct: 89  LIIGIFGVHQSRAPYTITYAVWCLIWFALNLTIIALYL 126


>SB_41473| Best HMM Match : Shugoshin_C (HMM E-Value=8.2)
          Length = 144

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 131 KFPFSQVFLPPKDTGKHTEFTENQEVEVFARSNE 232
           ++P ++  +  KD G   +FT NQ++ V    +E
Sbjct: 52  QWPRNETLVGMKDEGDRMKFTRNQQISVLHNQHE 85


>SB_30792| Best HMM Match : SH3_1 (HMM E-Value=3.1)
          Length = 303

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 29  EVYGENGAYYKAIVTDVLDNEVLVAFENDWQPES 130
           ++  ENGAY     TD  +++ LV  E + QP S
Sbjct: 42  QIQEENGAYPSIASTDRRESDALVTTEVNVQPSS 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,976,431
Number of Sequences: 59808
Number of extensions: 294086
Number of successful extensions: 837
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)